RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ABHD16BQ9H3Z7 469 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 SLC25A37Q9NYZ2 338 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 GNPTGQ9UJJ9 305 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 SLC12A8A0AV02 714 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 A8MV72 311 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 ZNF701M0R085 212 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 FGF10O15520 208 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 RPP40O75818 363 aaKnown RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 ANGPTL1O95841 491 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 CA5AP35218 305 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 RPS24P62847 133 aaKnown RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 NKX3-2P78367 333 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 MVKQ03426 396 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 GALNT1Q10472 559 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 SLC14A1Q13336 389 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 SLC14A2Q15849 920 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ARMC12Q5T9G4 340 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 FRA10AC1Q70Z53 315 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 AHSA2Q719I0 299 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 CEP68Q76N32 757 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 VTCN1Q7Z7D3 282 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 CAPSLQ8WWF8 208 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 KIAA1191Q96A73 305 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 PYCR2Q96C36 320 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 TSSK3Q96PN8 268 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ZYG11BQ9C0D3 744 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ROGDIQ9GZN7 287 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ZBTB20Q9HC78 741 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 E2F3O00716 465 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 PRMT5O14744 637 aaPredicted RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 SSX4O60224 188 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 MC4RP32245 332 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 TTKP33981 857 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 OXA1LQ15070 435 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 CRY1Q16526 586 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 XKR4Q5GH76 650 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 ZFAND4Q86XD8 727 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 PTRH1Q86Y79 214 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 SCML4Q8N228 414 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 EGFL8Q99944 293 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 BOCQ9BWV1 1114 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 PTCH2Q9Y6C5 1203 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 LOC100506127A0A0U1RQW1 187 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 FAM92AA1XBS5 289 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 CNOT3O75175 753 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 DLGAP3O95886 979 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 IGLV3-25P01717 112 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 MT-ND2P03891 347 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 ENO2P09104 434 aaPredicted RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 DBTP11182 482 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 ODC1P11926 461 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 DNAJB2P25686 324 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 POLD2P49005 469 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 NUDT6P53370 316 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 MAPRE1Q15691 268 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 CPSF6Q16630 551 aaKnown RBP eCLIP12.12□□□□□ -0.47
LDLR-205ENST00000557933 C16orf59Q7L2K0 433 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 STON2Q8WXE9 905 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 DPH2Q9BQC3 489 aaPredicted RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 INPP5KQ9BT40 448 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 CCSER2Q9H7U1 834 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 MRM3Q9HC36 420 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 COMMD8Q9NX08 183 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 TRMT6Q9UJA5 497 aaKnown RBP12.12□□□□□ -0.47
LDLR-205ENST00000557933 ABCG2Q9UNQ0 655 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 PCDHB14Q9Y5E9 798 aa12.12□□□□□ -0.47
LDLR-205ENST00000557933 CBX4O00257 560 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 BCKDKO14874 412 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 RECQL5O94762 991 aaPredicted RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 RPS17P08708 135 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 UROSP10746 265 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 DCTP40126 519 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ISL1P61371 349 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 TWF1Q12792 350 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 SKIV2LQ15477 1246 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 NPTX1Q15818 432 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 MAPKAPK3Q16644 382 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 CYP27C1Q4G0S4 372 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 CES5AQ6NT32 575 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 CYP4Z1Q86W10 505 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 METTL23Q86XA0 190 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 LIX1Q8N485 282 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ZNF540Q8NDQ6 660 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 FAM83FQ8NEG4 500 aaPredicted RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 FAR1Q8WVX9 515 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 RORBQ92753 470 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 EGLN2Q96KS0 407 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 ZNF347Q96SE7 839 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 IPPKQ9H8X2 491 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 CSNK1G1Q9HCP0 422 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 HCSTQ9UBK5 93 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 FAM32AQ9Y421 112 aaKnown RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 NEUROG3Q9Y4Z2 214 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 FAM234BA2RU67 622 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 C17orf102A2RUQ5 167 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 MBLAC1A4D2B0 266 aaPredicted RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 SOBPA7XYQ1 873 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 H0Y626 953 aa12.11□□□□□ -0.47
LDLR-205ENST00000557933 KPNA4O00629 521 aaPredicted RBP12.11□□□□□ -0.47
LDLR-205ENST00000557933 TRIM16O95361 564 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms