RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PCDHB1	Q9Y5F3	818 aa		16	■□□□□ 0.15
SHMT2-231	ENST00000557433	BCKDK	O14874	412 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	RAD51B	O15315	384 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	INSIG1	O15503	277 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	ERN1	O75460	977 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	E2F6	O75461	281 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	PRSS56	P0CW18	603 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	MAGEA10	P43363	369 aa	Predicted RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	EIF2B2	P49770	351 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	HNRNPF	P52597	415 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	DGKQ	P52824	942 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	BEX3	Q00994	111 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	CCDC92	Q53HC0	331 aa	Predicted RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	FBXO48	Q5FWF7	155 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	SYT6	Q5T7P8	510 aa	Predicted RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	SHQ1	Q6PI26	577 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	LRRC8D	Q7L1W4	858 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	RBM23	Q86U06	439 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	OR4F6	Q8NGB9	312 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	BRI3BP	Q8WY22	251 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	SLC35B4	Q969S0	331 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	RHBDF1	Q96CC6	855 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	CINP	Q9BW66	212 aa	Predicted RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	DPY30	Q9C005	99 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	NACA2	Q9H009	215 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	ARMC7	Q9H6L4	198 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	TLR8	Q9NR97	1041 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	FAM32A	Q9Y421	112 aa	Known RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	CCL27	Q9Y4X3	112 aa		15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	GPC6	Q9Y625	555 aa	Predicted RBP	15.99	■□□□□ 0.15
SHMT2-231	ENST00000557433	TMEM247	A6NEH6	219 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	OR7A17	O14581	309 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	NOBOX	O60393	691 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	NIPSNAP2	O75323	286 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	INMT	O95050	263 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	HTR6	P50406	440 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	EMX1	Q04741	257 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	MGAT3	Q09327	533 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	PON2	Q15165	354 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	NKG7	Q16617	165 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	HABP4	Q5JVS0	413 aa	Known RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	MILR1	Q7Z6M3	343 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ELMOD1	Q8N336	334 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	HASPIN	Q8TF76	798 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	YIPF6	Q96EC8	236 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	SGIP1	Q9BQI5	828 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ADGRE3	Q9BY15	652 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	DUSP21	Q9H596	190 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	UBA2	Q9UBT2	640 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	INTS6	Q9UL03	887 aa	Known RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	INVS	Q9Y283	1065 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	DHRS7	Q9Y394	339 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	HTR3E	A5X5Y0	456 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	AQP9	O43315	295 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	JRK	O75564	520 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	CREG1	O75629	220 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	FKBP9	O95302	570 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ANGPTL1	O95841	491 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	GLUD1	P00367	558 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	SLC2A4	P14672	509 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	TACR2	P21452	398 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	AGXT	P21549	392 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	TGM1	P22735	817 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	HOXD9	P28356	352 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	MC4R	P32245	332 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ARL1	P40616	181 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	TRAF3	Q13114	568 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	DSC3	Q14574	896 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	RFTN2	Q52LD8	501 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	P2RY8	Q86VZ1	359 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	CALHM3	Q86XJ0	350 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	LACC1	Q8IV20	430 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	PLPP6	Q8IY26	295 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	LGI2	Q8N0V4	545 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	FAM86B1	Q8N7N1	296 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ZNF513	Q8N8E2	541 aa	Predicted RBP	15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	MDGA1	Q8NFP4	955 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	OR6Q1	Q8NGQ2	317 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	CLMP	Q9H6B4	373 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	RMND5A	Q9H871	391 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	ASB1	Q9Y576	335 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	PCDHB5	Q9Y5E4	795 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	DGKB	Q9Y6T7	804 aa		15.98	■□□□□ 0.15
SHMT2-231	ENST00000557433	TRBV5-3	A0A0A0MS03	114 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	SLC12A8	A0AV02	714 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	ISPD	A4D126	451 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433		F5H5T6	163 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	TMEM189-UBE2V1	I3L0A0	370 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	GJB3	O75712	270 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	PGR	P06401	933 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	CR2	P20023	1033 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	MAGEA2	P43356	314 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	ST13	P50502	369 aa	Known RBP	15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	ARHGDIA	P52565	204 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	CAPN13	Q6MZZ7	669 aa	Predicted RBP	15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	CERS6	Q6ZMG9	384 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	TRIM46	Q7Z4K8	759 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	ADCK1	Q86TW2	530 aa		15.97	■□□□□ 0.15
SHMT2-231	ENST00000557433	MFSD4A	Q8N468	514 aa		15.97	■□□□□ 0.15

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