RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, human

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-210	ENST00000551981	LMAN1	P49257	510 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	MPP3	Q13368	585 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SSPN	Q14714	243 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SLC18A3	Q16572	532 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DCAF10	Q5QP82	559 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	LRRC38	Q5VT99	294 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ZADH2	Q8N4Q0	377 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	IPMK	Q8NFU5	416 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	HM13	Q8TCT9	377 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	N4BP2L2	Q92802	583 aa	Predicted RBP	13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	RNF25	Q96BH1	459 aa	Predicted RBP	13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	MRGPRX2	Q96LB1	330 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	FERD3L	Q96RJ6	166 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ASB8	Q9H765	288 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	AGPAT4	Q9NRZ5	378 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DDX56	Q9NY93	547 aa	Known RBP	13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	AP1M2	Q9Y6Q5	423 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PCSK5	Q92824	1860 aa		13.76	□□□□□ -0.21
CHMP1A-210	ENST00000551981	POLE	Q07864	2286 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	C2orf81	A6NN90	581 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	C2orf74	A8MZ97	194 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	IFRD1	O00458	451 aa	Predicted RBP	13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	LDB2	O43679	373 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	KLF7	O75840	302 aa	Predicted RBP	13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PER3	P56645	1201 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	FANCC	Q00597	558 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	WASHC5	Q12768	1159 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TFDP2	Q14188	446 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	MLIP	Q5VWP3	458 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	C1QL3	Q5VWW1	255 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DAAM2	Q86T65	1068 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	HOOK3	Q86VS8	718 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	UBE2Q2	Q8WVN8	375 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	RBM41	Q96IZ5	413 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TRAPPC9	Q96Q05	1148 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	FCRL5	Q96RD9	977 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	VAT1	Q99536	393 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TFB2M	Q9H5Q4	396 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	NDOR1	Q9UHB4	597 aa		13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PTRH2	Q9Y3E5	179 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DIDO1	Q9BTC0	2240 aa	Known RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CCDC66	A2RUB6	948 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CFAP99	D6REC4	459 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	BTN3A3	O00478	584 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	BTN3A1	O00481	513 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SRP72	O76094	671 aa	Known RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	GLRB	P48167	497 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	UBASH3A	P57075	661 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	IQCB1	Q15051	598 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ZNF385C	Q66K41	422 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ZNF449	Q6P9G9	518 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SARM1	Q6SZW1	724 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CDHR3	Q6ZTQ4	885 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PID1	Q7Z2X4	250 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	AMIGO1	Q86WK6	493 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ST6GALNAC3	Q8NDV1	305 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SLC35G2	Q8TBE7	412 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	NAT14	Q8WUY8	206 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	HEXDC	Q8WVB3	486 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ULK4	Q96C45	1275 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	OXNAD1	Q96HP4	312 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	RANBP9	Q96S59	729 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	KLHL25	Q9H0H3	589 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DEF6	Q9H4E7	631 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ZNF552	Q9H707	407 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	MVB12B	Q9H7P6	319 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	VPS37B	Q9H9H4	285 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	P4HTM	Q9NXG6	502 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SAE1	Q9UBE0	346 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CRLS1	Q9UJA2	301 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PCDHGA10	Q9Y5H3	936 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CCDC88C	Q9P219	2028 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	APC	P25054	2843 aa		13.74	□□□□□ -0.21
CHMP1A-210	ENST00000551981	FER1L5	A0AVI2	2057 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	C17orf113	A0A1B0GUU1	675 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	OR2B3	O76000	313 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	GYPC	P04921	128 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TNNT1	P13805	278 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PVR	P15151	417 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ELAVL4	P26378	380 aa	Known RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PRLHR	P49683	370 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SOX8	P57073	446 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	DCD	P81605	110 aa	Known RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PTPRCAP	Q14761	206 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	NAA30	Q147X3	362 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	LLGL1	Q15334	1064 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TAF1A	Q15573	450 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	CYP2A13	Q16696	494 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	MFSD7	Q6UXD7	560 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981		Q6ZS92	163 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	RHOT2	Q8IXI1	618 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	SRRM1	Q8IYB3	904 aa	Known RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	ZNF567	Q8N184	647 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	LILRA3	Q8N6C8	439 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	OR4K2	Q8NGD2	314 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	OR52E1	Q8NGJ3	308 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	OR2Y1	Q8NGV0	311 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	PROKR1	Q8TCW9	393 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	P3H4	Q92791	437 aa		13.73	□□□□□ -0.21
CHMP1A-210	ENST00000551981	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms