RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 PRAMEF10O60809 474 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 GOT2P00505 430 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 KRT14P02533 472 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 C9P02748 559 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 POLBP06746 335 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 NELFEP18615 380 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CDH3P22223 829 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PSMA3P25788 255 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CXCR5P32302 372 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SHMT2P34897 504 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 RPL22P35268 128 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PDX1P52945 283 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CTSCP53634 463 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 GDF10P55107 478 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SESN2P58004 480 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 RPS15P62841 145 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TUBB4BP68371 445 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CCZ1BP86790 482 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CCZ1P86791 482 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 XIAPP98170 497 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 ABHD18Q0P651 414 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 GPS1Q13098 491 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PTK6Q13882 451 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TUBB2AQ13885 445 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TTLL9Q3SXZ7 439 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 ZNF648Q5T619 568 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 ARHGAP40Q5TG30 622 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 KCTD16Q68DU8 428 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 DENND5AQ6IQ26 1287 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 LRRC8EQ6NSJ5 796 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 UGT3A1Q6NUS8 523 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 INO80CQ6PI98 192 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 C6orf15Q6UXA7 325 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 C11orf96Q7Z7L8 435 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 AMIGO1Q86WK6 493 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PALM2Q8IXS6 379 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PPIL6Q8IXY8 311 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CACNA2D3Q8IZS8 1091 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PDIK1LQ8N165 341 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 RASGEF1CQ8N431 466 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 GPATCH11Q8N954 259 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 RCBTB1Q8NDN9 531 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 MCUQ8NE86 351 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SNRNP27Q8WVK2 155 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PATE1Q8WXA2 126 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TFGQ92734 400 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 DPH2Q9BQC3 489 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TUBB2BQ9BVA1 445 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 CARD6Q9BX69 1037 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 ULBP3Q9BZM4 244 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SEMA4CQ9C0C4 833 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 WWP1Q9H0M0 922 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 TFB2MQ9H5Q4 396 aaKnown RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 COG4Q9H9E3 785 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 GPN2Q9H9Y4 310 aaPredicted RBP5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 C1GALT1Q9NS00 363 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SOHLH2Q9NX45 425 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SLC23A2Q9UGH3 650 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 KLHL3Q9UH77 587 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 IL17BQ9UHF5 180 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 LNPEPQ9UIQ6 1025 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PADI1Q9ULC6 663 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 PSMD13Q9UNM6 376 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 SRPK3Q9UPE1 567 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 ASF1AQ9Y294 204 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 FLNCQ14315 2725 aa5.47□□□□□ -1.53
CLSTN3-215ENST00000544584 MYLKQ15746 1914 aa5.46□□□□□ -1.53
CLSTN3-215ENST00000544584 TCRBV7S2A1N4TA0A589 114 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 PIPSLA2A3N6 862 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 OR6C74A6NCV1 312 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 C21orf140B9A014 251 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 CCDC188H7C350 402 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 GAPDHSO14556 408 aaPredicted RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 SLC28A2O43868 658 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 CPNE3O75131 537 aaKnown RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 PHF2O75151 1096 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 RECKO95980 971 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 IGHEP01854 428 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 ESR1P03372 595 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 TUBB4AP04350 444 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 PIM1P11309 404 aaPredicted RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 FGF3P11487 239 aaPredicted RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 HGFP14210 728 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 TYRP1P17643 537 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 ITIH1P19827 911 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 ITGAXP20702 1163 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 OGNP20774 298 aaKnown RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 AGXTP21549 392 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 RPS3P23396 243 aaKnown RBP eCLIP5.46□□□□□ -1.543e-13■■■■□ 26.1
CLSTN3-215ENST00000544584 MPSTP25325 297 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 HSD17B2P37059 387 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 COILP38432 576 aaPredicted RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 SKIV2L2P42285 1042 aaKnown RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 SEPHS1P49903 392 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 ADARP55265 1226 aaKnown RBP5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 GNG11P61952 73 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 ACVR1Q04771 509 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 CALCOCO2Q13137 446 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 TUBB3Q13509 450 aa5.46□□□□□ -1.54
CLSTN3-215ENST00000544584 BOP1Q14137 746 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms