RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 EPB42P16452 691 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ZNF24P17028 368 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PTPN2P17706 415 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PSMC3P17980 439 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 MAPK1P28482 360 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 KRT6CP48668 564 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 GSK3BP49841 420 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PLOD1Q02809 727 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 RALGDSQ12967 914 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 TMTC4Q5T4D3 741 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CACHD1Q5VU97 1274 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CYP20A1Q6UW02 462 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 IL27RAQ6UWB1 636 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SPRED1Q7Z699 444 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ADGRG5Q8IZF4 528 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CMTM8Q8IZV2 173 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 OR52B6Q8NGF0 335 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 WFIKKN2Q8TEU8 576 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 OSCP1Q8WVF1 389 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CCDC97Q96F63 343 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 ASIC4Q96FT7 647 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 KCTD14Q9BQ13 255 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 SPATA16Q9BXB7 569 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SLC46A2Q9BY10 475 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ANKRD60Q9BZ19 345 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CD320Q9NPF0 282 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 MAPRE3Q9UPY8 281 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PTGDR2Q9Y5Y4 395 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 NOTCH4Q99466 2003 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TCRBV5S2A0A599 114 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 NPIPB15A6NHN6 443 aaPredicted RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 PSMD11O00231 422 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TXNDC9O14530 226 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 STK16O75716 305 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 RSL1D1O76021 490 aaKnown RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 CXCL14O95715 111 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 SRPRAP08240 638 aaKnown RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 PRPS2P11908 318 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 IL1RNP18510 177 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TCN1P20061 433 aaPredicted RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 VARSP26640 1264 aaKnown RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 AOAHP28039 575 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 VIPR1P32241 457 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GRIA3P42263 894 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 SPINT3P49223 89 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ERFP50548 548 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 UFM1P61960 85 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TUBA4AP68366 448 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ECT2LQ008S8 904 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 APOFQ13790 326 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 KIAA0040Q15053 153 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 NR6A1Q15406 480 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 FUT11Q495W5 492 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 LRRC66Q68CR7 880 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GDPD4Q6W3E5 623 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 CARM1Q86X55 608 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 HS6ST3Q8IZP7 471 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 FAM156AQ8NDB6 213 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GPR26Q8NDV2 337 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 HM13Q8TCT9 377 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 LKAAEAR1Q8TD35 194 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 HAUS8Q9BT25 410 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 PARVBQ9HBI1 364 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TUBA8Q9NY65 449 aaPredicted RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 INSL6Q9Y581 213 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 PRSS21Q9Y6M0 314 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 KIF26AQ9ULI4 1882 aaPredicted RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 CLDN9O95484 217 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GSTM1P09488 218 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 C1SP09871 688 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 SMIM18P0DKX4 95 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ARSAP15289 507 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 HLA-FP30511 346 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 AKT1P31749 480 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GNPDA1P46926 289 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GJA8P48165 433 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 GSTM4Q03013 218 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 PTSQ03393 145 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 LIPEQ05469 1076 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ATP6AP1Q15904 470 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 AP5B1Q2VPB7 878 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TBCELQ5QJ74 424 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 NANOGP8Q6NSW7 305 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 HMBOX1Q6NT76 420 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 LAYNQ6UX15 382 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ZSWIM9Q86XI8 627 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 TRAM1L1Q8N609 369 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 PAF1Q8N7H5 531 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 L3MBTL4Q8NA19 623 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 SMYD1Q8NB12 490 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 CANT1Q8WVQ1 401 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 AUTS2Q8WXX7 1259 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 LRTOMTQ8WZ04 291 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 IRF7Q92985 503 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 VPS35Q96QK1 796 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 EGFL8Q99944 293 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 C17orf80Q9BSJ5 609 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 BOCQ9BWV1 1114 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 YTHDF1Q9BYJ9 559 aaKnown RBP9.67□□□□□ -0.86
SS18-205ENST00000542420 COQ10BQ9H8M1 238 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms