RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CDH7Q9ULB5 785 aa7.88□□□□□ -1.15
PDLIM5-221ENST00000542407 GTF2A1LQ9UNN4 478 aa7.88□□□□□ -1.15
PDLIM5-221ENST00000542407 MTF2Q9Y483 593 aaPredicted RBP7.88□□□□□ -1.15
PDLIM5-221ENST00000542407 CPQQ9Y646 472 aa7.88□□□□□ -1.15
PDLIM5-221ENST00000542407 DOCK4Q8N1I0 1966 aa7.88□□□□□ -1.15
PDLIM5-221ENST00000542407 SHROOM3Q8TF72 1996 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 OR5K3A6NET4 321 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ERI2A8K979 691 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 BET1O15155 118 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 AKAP10O43572 662 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ABLIM3O94929 683 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SEC24AO95486 1093 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SERPINE1P05121 402 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SLC2A3P11169 496 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ARRB2P32121 409 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 NFATC3Q12968 1075 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DMC1Q14565 340 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 PON2Q15165 354 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 PSMD5Q16401 504 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 LRRC26Q2I0M4 334 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TBRG1Q3YBR2 411 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 NADSYN1Q6IA69 706 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 KCTD8Q6ZWB6 473 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TMCO2Q7Z6W1 182 aaPredicted RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DSG4Q86SJ6 1040 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 UMODL1-AS1Q8N2C9 162 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 PCDH20Q8N6Y1 951 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ZNF781Q8N8C0 355 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 OR52K1Q8NGK4 314 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ACDQ96AP0 544 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ART5Q96L15 291 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 FCRL3Q96P31 734 aaPredicted RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SORT1Q99523 831 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 NPAS2Q99743 824 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 OLFM1Q99784 485 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SEC22CQ9BRL7 303 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 POLE4Q9NR33 117 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 IARS2Q9NSE4 1012 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 OLA1Q9NTK5 396 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TINAGQ9UJW2 476 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SPATA2Q9UM82 520 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ZNF175Q9Y473 711 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RGSL1A5PLK6 1076 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DRGXA6NNA5 263 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DFFAO00273 331 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 MATN3O15232 486 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TPST1O60507 370 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 USP12O75317 370 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TIPRLO75663 272 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 BCAS2O75934 225 aaPredicted RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 CNTN5O94779 1100 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 JCHAINP01591 159 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RALBP11234 206 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 GALNSP34059 522 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RFC2P35250 354 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DPP6P42658 865 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ALDH7A1P49419 539 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RAD23AP54725 363 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SESN2P58004 480 aaPredicted RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ABCE1P61221 599 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RPP30P78346 268 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DEFB103AP81534 67 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 RING1Q06587 406 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ERV3-1Q14264 604 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 FRG1Q14331 258 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 GEN1Q17RS7 908 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 KRBOX4Q5JUW0 171 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 LIN54Q6MZP7 749 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 OFCC1Q8IZS5 231 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TNS4Q8IZW8 715 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 SLC39A11Q8N1S5 342 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ATPAF2Q8N5M1 289 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 BPIFB6Q8NFQ5 453 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 MAPK15Q8TD08 544 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 UTP15Q8TED0 518 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DLG3Q92796 817 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 IGSF8Q969P0 613 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 ZNF566Q969W8 418 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 BTN2A3PQ96KV6 586 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 C1orf50Q9BV19 199 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 STN1Q9H668 368 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 TMEM248Q9NWD8 314 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 MARCH2Q9P0N8 246 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 DIMT1Q9UNQ2 313 aaKnown RBP7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 MED16Q9Y2X0 877 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 HCN4Q9Y3Q4 1203 aa7.87□□□□□ -1.15
PDLIM5-221ENST00000542407 UBXN8O00124 270 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 SOD2P04179 222 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 CLTBP09497 229 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 RHOQP17081 205 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 HMGA1P17096 107 aaKnown RBP7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 OR1D2P34982 312 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 GRIA3P42263 894 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 NCF4Q15080 339 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 UGP2Q16851 508 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 EML3Q32P44 896 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 PPM1JQ5JR12 505 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 TMEM198Q66K66 360 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 GALNT5Q7Z7M9 940 aa7.86□□□□□ -1.15
PDLIM5-221ENST00000542407 TMEM135Q86UB9 458 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms