RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 HYAL2Q12891 473 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 PYCR3Q53H96 274 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 ZC3H12BQ5HYM0 836 aaKnown RBP9.31□□□□□ -0.92
CLIP1-214ENST00000540539 GNASQ5JWF2 1037 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 SPOCD1Q6ZMY3 1216 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 MCOLN2Q8IZK6 566 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 RDH10Q8IZV5 341 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 RAB7BQ96AH8 199 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 TRIM43Q96BQ3 446 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-214ENST00000540539 ACSF2Q96CM8 615 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-214ENST00000540539 RBM18Q96H35 190 aaKnown RBP9.31□□□□□ -0.92
CLIP1-214ENST00000540539 KREMEN1Q96MU8 473 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 FRMD6Q96NE9 622 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 ERVK-18Q9QC07 812 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 OGDHLQ9ULD0 1010 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 ERVK-19Q9WJR5 959 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 LYVE1Q9Y5Y7 322 aa9.31□□□□□ -0.92
CLIP1-214ENST00000540539 ZFC3H1O60293 1989 aaKnown RBP9.31□□□□□ -0.92
CLIP1-214ENST00000540539 hCG_1818297A0A087WSY0 165 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 TTC24A2A3L6 582 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 GRID2O43424 1007 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RFPL3O75679 317 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 PGLSO95336 258 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 LDLRP01130 860 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CHRM5P08912 532 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 TCF3P15923 654 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CYP2J2P51589 502 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 MANEALQ5VSG8 457 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 TMEM179Q6ZVK1 233 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 FAM183BPQ6ZVS7 135 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ZNF467Q7Z7K2 595 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 C12orf40Q86WS4 652 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CLEC10AQ8IUN9 316 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 VWA5B2Q8N398 1253 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 PLD5Q8N7P1 536 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 GDPD1Q8N9F7 314 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 HMGCLL1Q8TB92 370 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RDH11Q8TC12 318 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 MOCOSQ96EN8 888 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 HYLS1Q96M11 299 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ZSWIM3Q96MP5 696 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 C19orf43Q9BQ61 176 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 SLAMF7Q9NQ25 335 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ACSS2Q9NR19 701 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 MTMR4Q9NYA4 1195 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RPS6KA6Q9UK32 745 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 MGAT4BQ9UQ53 548 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CDYLQ9Y232 598 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 PEX16Q9Y5Y5 336 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 IGKV6D-41A0A0C4DH26 115 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CLDN24A6NM45 220 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 EFCAB7A8K855 629 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 AGRPO00253 132 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 SRP72O76094 671 aaKnown RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CALCAP01258 141 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RAF1P04049 648 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ALPLP05186 524 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 MYCLP12524 364 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 HOXA6P31267 233 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ATP5C1P36542 298 aaKnown RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 PIGAP37287 484 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CAP2P40123 477 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 PCP4P48539 62 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 SERPINB9P50453 376 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ALDH3A2P51648 485 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 HK3P52790 923 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CDH8P55286 799 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 SNAP25P60880 206 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 YWHAEP62258 255 aaKnown RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 HERVK_113P63132 956 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 CYP4F8P98187 520 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 EXOSC2Q13868 293 aaKnown RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 KRT39Q6A163 491 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 KDM4DQ6B0I6 523 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 C8orf82Q6P1X6 216 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 DMRTC2Q8IXT2 367 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 NLGN4YQ8NFZ3 816 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ACTL9Q8TC94 416 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 EDARADDQ8WWZ3 215 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RPL10LQ96L21 214 aaKnown RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ZNF251Q9BRH9 671 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 TBCDQ9BTW9 1192 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RNF121Q9H920 327 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 C6orf50Q9HD87 102 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 ZNF358Q9NW07 568 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 RBAKQ9NYW8 714 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-214ENST00000540539 TRAPPC4Q9Y296 219 aa9.3□□□□□ -0.92
CLIP1-214ENST00000540539 FAM159BA6NKW6 160 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 DNASE2O00115 360 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-214ENST00000540539 STX16O14662 325 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 MRASO14807 208 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 INPPL1O15357 1258 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 KCNN4O15554 427 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 HRO43593 1189 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 CYP7B1O75881 506 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 LRIG2O94898 1065 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 CCNDBP1O95273 360 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 TSPAN12O95859 305 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 CA5AP35218 305 aa9.29□□□□□ -0.92
CLIP1-214ENST00000540539 LIPAP38571 399 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms