RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TFB2MQ9H5Q4 396 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 MVB12BQ9H7P6 319 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 THSD1Q9NS62 852 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 INTS10Q9NVR2 710 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 GRHL1Q9NZI5 618 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 GNPTGQ9UJJ9 305 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 MED16Q9Y2X0 877 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 SNX24Q9Y343 169 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 PCDHGA3Q9Y5H0 932 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 OR5K3A6NET4 321 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 B4E171 279 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 C9orf172C9J069 976 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 F8W8V4 182 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 IFRD1O00458 451 aaPredicted RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 KIF1CO43896 1103 aaKnown RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 ESR1P03372 595 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 AMD1P17707 334 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 TSPAN7P41732 249 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 PPP1CAP62136 330 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 CTBP1Q13363 440 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 FRG1Q14331 258 aaKnown RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 KIF26BQ2KJY2 2108 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 BBS9Q3SYG4 887 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 STEAP4Q687X5 459 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 ZNF470Q6ECI4 717 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 PTRHD1Q6GMV3 140 aaKnown RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 ZNF549Q6P9A3 640 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 ZNF449Q6P9G9 518 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 PRSS42Q7Z5A4 293 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 DENND6AQ8IWF6 608 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 PDIK1LQ8N165 341 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 FERD3LQ96RJ6 166 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 TSSK1BQ9BXA7 367 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 TRIM31Q9BZY9 425 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 C20orf96Q9NUD7 363 aaPredicted RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 OCIAD1Q9NX40 245 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 SIDT1Q9NXL6 827 aaKnown RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 WHRNQ9P202 907 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 GALPQ9UBC7 116 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 PISDQ9UG56 409 aa12.63□□□□□ -0.39
VPS28-216ENST00000533806 URB1O60287 2271 aaKnown RBP12.63□□□□□ -0.39
VPS28-216ENST00000533806 A8MU76 341 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 H3BMM5 538 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 TUBB4AP04350 444 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 F7P08709 466 aaPredicted RBP12.62□□□□□ -0.39
VPS28-216ENST00000533806 JMJD7P0C870 316 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 ITGB6P18564 788 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 GABRB3P28472 473 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 FMO4P31512 558 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 SLC5A2P31639 672 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 CSTF2P33240 577 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS28-216ENST00000533806 ELK3P41970 407 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 SLC1A2P43004 574 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 EIF3BP55884 814 aaKnown RBP12.62□□□□□ -0.39
VPS28-216ENST00000533806 MC2RQ01718 297 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 HSPA14Q0VDF9 509 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 GRB7Q14451 532 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 HIF1AQ16665 826 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 HSP90AA5PQ58FG0 334 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 SPANXN3Q5MJ09 141 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 KLHL35Q6PF15 583 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 FOXR1Q6PIV2 292 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 UNC5AQ6ZN44 842 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 CNTN4Q8IWV2 1026 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 TBC1D21Q8IYX1 336 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 OR52E1Q8NGJ3 308 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 OR5AR1Q8NGP9 310 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 OR5K2Q8NHB8 316 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 ZDHHC12Q96GR4 267 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 SLC41A2Q96JW4 573 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 TGM7Q96PF1 710 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 PANX3Q96QZ0 392 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 MENTQ9BUN1 341 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 SPRY4Q9C004 299 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 ZNF768Q9H5H4 540 aaKnown RBP12.62□□□□□ -0.39
VPS28-216ENST00000533806 FBXO8Q9NRD0 319 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 HRASLS2Q9NWW9 162 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 FOXJ2Q9P0K8 574 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 AKAP7Q9P0M2 348 aaPredicted RBP12.62□□□□□ -0.39
VPS28-216ENST00000533806 FBXO5Q9UKT4 447 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 VPS9D1Q9Y2B5 631 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 CRYL1Q9Y2S2 319 aa12.62□□□□□ -0.39
VPS28-216ENST00000533806 UBA6A0AVT1 1052 aaPredicted RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 OR6C74A6NCV1 312 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 AGRPO00253 132 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 BTN3A3O00478 584 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 KPNA5O15131 536 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PFDN6O15212 129 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PRAMEF10O60809 474 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 NIPSNAP2O75323 286 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 HAUS5O94927 633 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 APOA4P06727 396 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ERVK-10P10266 1014 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PKMP14618 531 aaKnown RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 CLCN7P51798 805 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ARL4CP56559 192 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PCBP4P57723 403 aaKnown RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 TIAL1Q01085 375 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS28-216ENST00000533806 PRKG2Q13237 762 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms