RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ASIC2	Q16515	512 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	CYP2A13	Q16696	494 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	CCDC70	Q6NSX1	233 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	IGFL2	Q6UWQ7	119 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	B4GALNT4	Q76KP1	1039 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZNF571	Q7Z3V5	609 aa	Predicted RBP	12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	NT5DC3	Q86UY8	548 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	MAP7D3	Q8IWC1	876 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	GPR135	Q8IZ08	494 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	TXLNB	Q8N3L3	684 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	RASGEF1A	Q8N9B8	481 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	CCNY	Q8ND76	341 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	KIF18A	Q8NI77	898 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	GRHL3	Q8TE85	626 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	FAR1	Q8WVX9	515 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	TADA1	Q96BN2	335 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	FAF2	Q96CS3	445 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	CCDC42	Q96M95	316 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	C16orf45	Q96MC5	204 aa	Predicted RBP	12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	C12orf66	Q96MD2	445 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	TRAPPC9	Q96Q05	1148 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	SLX1A	Q9BQ83	275 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	CHST11	Q9NPF2	352 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	ATP13A2	Q9NQ11	1180 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	SMOX	Q9NWM0	555 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	P4HTM	Q9NXG6	502 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	NDOR1	Q9UHB4	597 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	ANAPC7	Q9UJX3	599 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	AP1M2	Q9Y6Q5	423 aa		12.06	□□□□□ -0.48
CAPN1-223	ENST00000533079	AGPS	O00116	658 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	KCNK1	O00180	336 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	DDX3X	O00571	662 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZNF749	O43361	778 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	LDB2	O43679	373 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	IPO7	O95373	1038 aa	Known RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	NDST3	O95803	873 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	POLR2C	P19387	275 aa	Predicted RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	CA5A	P35218	305 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	SPAM1	P38567	509 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	CTSC	P53634	463 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZBTB17	Q13105	803 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZNF169	Q14929	603 aa	Predicted RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	LONRF2	Q1L5Z9	754 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	RHBDD2	Q6NTF9	364 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	FAM180A	Q6UWF9	173 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	CNTD1	Q8N815	330 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	ACVR1C	Q8NER5	493 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	RELT	Q969Z4	430 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	INSM2	Q96T92	566 aa	Predicted RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	AP1M1	Q9BXS5	423 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	WWP1	Q9H0M0	922 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	SLC25A51	Q9H1U9	297 aa		12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	PTRH2	Q9Y3E5	179 aa	Known RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	CFAP20	Q9Y6A4	193 aa	Known RBP	12.05	□□□□□ -0.48
CAPN1-223	ENST00000533079	GSAP	A4D1B5	854 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	MGAT4D	A6NG13	374 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	OR2AG2	A6NM03	316 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	OTUD4	Q01804	1114 aa	Known RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	GBE1	Q04446	702 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	KLHL30	Q0D2K2	578 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	CDC16	Q13042	620 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	TLR1	Q15399	786 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	SPA17	Q15506	151 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	INA	Q16352	499 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	PPP2R5E	Q16537	467 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	PCSK7	Q16549	785 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	IRAK1BP1	Q5VVH5	260 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	RPUSD3	Q6P087	351 aa	Known RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	DUS1L	Q6P1R4	473 aa	Known RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	TMEM220	Q6QAJ8	160 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	BNC2	Q6ZN30	1099 aa	Predicted RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	FJX1	Q86VR8	437 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	NXPE1	Q8N323	547 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	KCTD6	Q8NC69	237 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	OR2L2	Q8NH16	312 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	PTER	Q96BW5	349 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	LINC00615	Q96LM1	132 aa	Predicted RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	PPM1M	Q96MI6	270 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	GBP5	Q96PP8	586 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	CCM2	Q9BSQ5	444 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	SRMS	Q9H3Y6	488 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	EPS8L2	Q9H6S3	715 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	IL26	Q9NPH9	171 aa		12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	IFT80	Q9P2H3	777 aa	Predicted RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	SUCO	Q9UBS9	1254 aa	Known RBP	12.04	□□□□□ -0.48
CAPN1-223	ENST00000533079	GLYATL1P3	A0A0U1RQE8	302 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	CCDC66	A2RUB6	948 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	C2orf74	A8MZ97	194 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	ZNF487	B1APH4	448 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	MYO1F	O00160	1098 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	PJA2	O43164	708 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	ST6GAL1	P15907	406 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	PBLD	P30039	288 aa	Predicted RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	PRDX3	P30048	256 aa	Known RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	ARHGAP25	P42331	645 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	LMAN1	P49257	510 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	DCD	P81605	110 aa	Known RBP	12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	KRT33B	Q14525	404 aa		12.03	□□□□□ -0.48
CAPN1-223	ENST00000533079	BCL7A	Q4VC05	210 aa		12.03	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms