RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CTSL3PQ5NE16 218 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 FOXR1Q6PIV2 292 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ARHGAP22Q7Z5H3 698 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 SLC22A15Q8IZD6 547 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 KRT222Q8N1A0 295 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 AGBL5Q8NDL9 886 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 CALML6Q8TD86 181 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ASZ1Q8WWH4 475 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 TFGQ92734 400 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 FGF11Q92914 225 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 BIRC8Q96P09 236 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ERP44Q9BS26 406 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 FAM167BQ9BTA0 163 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 C20orf96Q9NUD7 363 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 FAM53CQ9NYF3 392 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 WHRNQ9P202 907 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 RAXQ9Y2V3 346 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 USP24Q9UPU5 2620 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 ACACAQ13085 2346 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 IQCF5A8MTL0 148 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 BHMG1C9JSJ3 638 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 KPNA5O15131 536 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 TOX3O15405 576 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 TLX3O43711 291 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 GPC4O75487 556 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 APOA4P06727 396 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 ITGB6P18564 788 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 CSTF2P33240 577 aaKnown RBP eCLIP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 SLC1A2P43004 574 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 MRPS25P82663 173 aaKnown RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 CBLBQ13191 982 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 KRT33BQ14525 404 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 BRD3Q15059 726 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 ERCC6LQ2NKX8 1250 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 SPANXN3Q5MJ09 141 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 FBXO38Q6PIJ6 1188 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 PRSS42Q7Z5A4 293 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 KCNMB4Q86W47 210 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 IGDCC3Q8IVU1 814 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 ACVR1CQ8NER5 493 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 JPH3Q8WXH2 748 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 C9orf72Q96LT7 481 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 WDR83Q9BRX9 315 aaKnown RBP14.65□□□□□ -0.06
CPSF1-208ENST00000532560 B3GNT4Q9C0J1 378 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 PISDQ9UG56 409 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 CDYLQ9Y232 598 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 SNX24Q9Y343 169 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 PCDHGA7Q9Y5G6 932 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 TEX264Q9Y6I9 313 aa14.65□□□□□ -0.06
CPSF1-208ENST00000532560 ZFHX4Q86UP3 3567 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 OR5K3A6NET4 321 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 SRRM3A6NNA2 597 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 E7ESA3 106 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 CAPN5O15484 640 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 SLCO2B1O94956 709 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 S1PR4O95977 384 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ITIH1P19827 911 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ETV5P41161 510 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ELK3P41970 407 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 PCBP4P57723 403 aaKnown RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 HSPA14Q0VDF9 509 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 CALCOCO2Q13137 446 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 SNAP47Q5SQN1 464 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 STEAP4Q687X5 459 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 DUPD1Q68J44 220 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 NAPRTQ6XQN6 538 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 OOSP2Q86WS3 158 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 DENND6AQ8IWF6 608 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 TBC1D21Q8IYX1 336 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ZDHHC12Q96GR4 267 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 PWWP2AQ96N64 755 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 TGM7Q96PF1 710 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 FERD3LQ96RJ6 166 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 HGH1Q9BTY7 390 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 RAB17Q9H0T7 212 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 TRIT1Q9H3H1 467 aaKnown RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 TFB2MQ9H5Q4 396 aaKnown RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 GRHL1Q9NZI5 618 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ZC3H7BQ9UGR2 993 aaKnown RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 KLHL3Q9UH77 587 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ACSL6Q9UKU0 697 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 CHMP2BQ9UQN3 213 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 ASF1AQ9Y294 204 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 CRYL1Q9Y2S2 319 aa14.64□□□□□ -0.07
CPSF1-208ENST00000532560 UTP11Q9Y3A2 253 aaKnown RBP14.64□□□□□ -0.07
CPSF1-208ENST00000532560 B4E171 279 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 NVLO15381 856 aaKnown RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 ATP5DP30049 168 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 FMO4P31512 558 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 TSPAN7P41732 249 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 LEPRP48357 1165 aaKnown RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 FRG1Q14331 258 aaKnown RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 HSP90AA5PQ58FG0 334 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 ZNF789Q5FWF6 425 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 PLEKHS1Q5SXH7 462 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 IRGCQ6NXR0 463 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 UNC5AQ6ZN44 842 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 OTOAQ7RTW8 1153 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 VRK3Q8IV63 474 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 CNTN4Q8IWV2 1026 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms