RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RPA4Q13156 261 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 SEMA5AQ13591 1074 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 UBAP2LQ14157 1087 aaKnown RBP14.32□□□□□ -0.12
VPS28-215ENST00000531924 POU6F1Q14863 301 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 DENND5AQ6IQ26 1287 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 AADACL2Q6P093 401 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 AMIGO1Q86WK6 493 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 APLFQ8IW19 511 aaPredicted RBP14.32□□□□□ -0.12
VPS28-215ENST00000531924 PHC3Q8NDX5 983 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 ALG3Q92685 438 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 MRFAP1L1Q96HT8 127 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 PPM1MQ96MI6 270 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 RUFY1Q96T51 708 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 SLC25A23Q9BV35 468 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 CHST8Q9H2A9 424 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 AKIRIN1Q9H9L7 192 aaPredicted RBP14.32□□□□□ -0.12
VPS28-215ENST00000531924 SMARCAL1Q9NZC9 954 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 SNX7Q9UNH6 387 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 PLAAQ9Y263 795 aa14.32□□□□□ -0.12
VPS28-215ENST00000531924 GRID2IPA4D2P6 1211 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 ARGFXA6NJG6 315 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 C2orf74A8MZ97 194 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 MIF4GDA9UHW6 222 aaKnown RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 TMEM150CB9EJG8 249 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 DNAJB5O75953 348 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 AP2A2O94973 939 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 GSTM1P09488 218 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 PRDX3P30048 256 aaKnown RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 LMAN1P49257 510 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 CDKN1CP49918 316 aaPredicted RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 CCL11P51671 97 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 GSTM4Q03013 218 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 KIF5AQ12840 1032 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 GPS2Q13227 327 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 PRKG2Q13237 762 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 SYTL3Q4VX76 610 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 TAB3Q8N5C8 712 aaPredicted RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 CLDN19Q8N6F1 224 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 EFCAB3Q8N7B9 438 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 ACRBPQ8NEB7 543 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 STYXQ8WUJ0 223 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 TFGQ92734 400 aaPredicted RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS28-215ENST00000531924 LRFN5Q96NI6 719 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 TTC1Q99614 292 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 HGH1Q9BTY7 390 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 LACRTQ9GZZ8 138 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 OR52A5Q9H2C5 316 aa14.31□□□□□ -0.12
VPS28-215ENST00000531924 TFB2MQ9H5Q4 396 aaKnown RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 ACTR5Q9H9F9 607 aaPredicted RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 NLE1Q9NVX2 485 aaPredicted RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 ZNF106Q9H2Y7 1883 aaKnown RBP14.31□□□□□ -0.12
VPS28-215ENST00000531924 TTLL8A6PVC2 850 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 C9J4A7 227 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 F8W8V4 182 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 K7EM74 188 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 QSOX1O00391 747 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 BTN3A1O00481 513 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 AGXTP21549 392 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 MLLT10P55197 1068 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 CHAF1BQ13112 559 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 MSLNQ13421 630 aaPredicted RBP14.3□□□□□ -0.12
VPS28-215ENST00000531924 IZUMO3Q5VZ72 239 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 RAD9BQ6WBX8 426 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 LINC00523Q86TU6 105 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 GPR135Q8IZ08 494 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 ENDOVQ8N8Q3 282 aaKnown RBP14.3□□□□□ -0.12
VPS28-215ENST00000531924 LRRC57Q8N9N7 239 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 DNAAF3Q8N9W5 541 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 OR52E1Q8NGJ3 308 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 CDKN2AIPNLQ96HQ2 116 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 BAG1Q99933 345 aaPredicted RBP14.3□□□□□ -0.12
VPS28-215ENST00000531924 TRIM55Q9BYV6 548 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 KLHL25Q9H0H3 589 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 ING2Q9H160 280 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 XKR8Q9H6D3 395 aa14.3□□□□□ -0.12
VPS28-215ENST00000531924 IGLV3-16A0A075B6K0 115 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 TRBV5-4A0A0C4DH59 114 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 CCDC78A2IDD5 438 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 E7EQ34 232 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 E7EVH7 732 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 H7C0S8 307 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 BTN3A3O00478 584 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 LIN7AO14910 233 aaPredicted RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 KDM1AO60341 852 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 METTL18O95568 372 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 AP2A1O95782 977 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 FTH1P02794 183 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 HBQ1P09105 142 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 RAB40ALP0C0E4 278 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ST6GAL1P15907 406 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 MSNP26038 577 aaKnown RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 PDHA2P29803 388 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 SHMT2P34897 504 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 NSG1P42857 185 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 ITGA1P56199 1179 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 IL10RAQ13651 578 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 LAMB3Q13751 1172 aa14.29□□□□□ -0.12
VPS28-215ENST00000531924 BOP1Q14137 746 aaKnown RBP14.29□□□□□ -0.12
VPS28-215ENST00000531924 DBN1Q16643 649 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms