RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ZNF658BQ4V348 819 aaPredicted RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 PIP5KL1Q5T9C9 394 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 FAM46CQ5VWP2 391 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 EP400NLQ6ZTU2 488 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SPATA19Q7Z5L4 167 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 PGAM4Q8N0Y7 254 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 FBXW8Q8N3Y1 598 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SNX31Q8N9S9 440 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 OR9I1Q8NGQ6 314 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SKA2Q8WVK7 121 aaPredicted RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 NPAS2Q99743 824 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 CCM2Q9BSQ5 444 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 NTMT1Q9BV86 223 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 TRIM54Q9BYV2 358 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SDR39U1Q9NRG7 319 aaPredicted RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 PRPF19Q9UMS4 504 aaKnown RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 TMEM265A0A087WTH1 108 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 SLC5A10A0PJK1 596 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 LZTS3O60299 673 aaPredicted RBP20.26■□□□□ 0.83
VPS28-209ENST00000528142 PDE5AO76074 875 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 SORBS2O94875 1100 aaKnown RBP20.26■□□□□ 0.83
VPS28-209ENST00000528142 MATN4O95460 622 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 SNRPB2P08579 225 aaKnown RBP20.26■□□□□ 0.83
VPS28-209ENST00000528142 IGFBP4P22692 258 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 DRD3P35462 400 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 MRPL19P49406 292 aaKnown RBP20.26■□□□□ 0.83
VPS28-209ENST00000528142 HTR6P50406 440 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 CCNG1P51959 295 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 GSTA3Q16772 222 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 C6orf163Q5TEZ5 329 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 TMEM220Q6QAJ8 160 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 Q6ZSR9 355 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 TCAIMQ8N3R3 496 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 RSPH9Q9H1X1 276 aaPredicted RBP20.26■□□□□ 0.83
VPS28-209ENST00000528142 NDE1Q9NXR1 346 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 ANGPTL3Q9Y5C1 460 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 GPR45Q9Y5Y3 372 aa20.26■□□□□ 0.83
VPS28-209ENST00000528142 KATNA1O75449 491 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 HIST1H2AGP0C0S8 130 aaPredicted RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 HIST1H2ADP20671 130 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 WASP42768 502 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 ART3Q13508 389 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 CAMK2GQ13555 558 aaPredicted RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 C1orf146Q5VVC0 180 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 EZH1Q92800 747 aaPredicted RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 HIST1H2AHQ96KK5 128 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 HIST1H2AJQ99878 128 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 P2RY13Q9BPV8 354 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 H2AFJQ9BTM1 129 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 SLC25A23Q9BV35 468 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 MRPL1Q9BYD6 325 aaKnown RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 SLC32A1Q9H598 525 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 RIC8BQ9NVN3 520 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 K7EQS6 105 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 LILRB5O75023 590 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 KRT36O76013 467 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 PSMG1O95456 288 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 IDO1P14902 403 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 EPB42P16452 691 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 EPORP19235 508 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 ARL1P40616 181 aaPredicted RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 TNFRSF4P43489 277 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 KIR2DL1P43626 348 aaPredicted RBP20.25■□□□□ 0.83
VPS28-209ENST00000528142 GPR1P46091 355 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 PIK3CGP48736 1102 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 HNMTP50135 292 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 LRP8Q14114 963 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 KIF19Q2TAC6 998 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 BCL7AQ4VC05 210 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 C2orf27AQ580R0 203 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 RAET1GQ6H3X3 334 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 MTSS1LQ765P7 747 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 ADGRG6Q86SQ4 1221 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 HPS6Q86YV9 775 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 CHPFQ8IZ52 775 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 MIER2Q8N344 545 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 EFCAB3Q8N7B9 438 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 CXorf40AQ8TE69 158 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 GLMNQ92990 594 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 WDR41Q9HAD4 459 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 EPS15L1Q9UBC2 864 aa20.25■□□□□ 0.83
VPS28-209ENST00000528142 H0Y3Z8 333 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 GSTM1P09488 218 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 EBLN1P0CF75 366 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 GNAZP19086 355 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 CYP2A7P20853 494 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 DPP6P42658 865 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 SLC6A12P48065 614 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 DIO3P55073 304 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 AP1S2P56377 157 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 GSTM4Q03013 218 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 REP15Q6BDI9 236 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 IL27RAQ6UWB1 636 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 RNF165Q6ZSG1 346 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 TRIM74Q86UV6 250 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 SFRP1Q8N474 314 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 AADATQ8N5Z0 425 aa20.24■□□□□ 0.83
VPS28-209ENST00000528142 LILRA3Q8N6C8 439 aaPredicted RBP20.24■□□□□ 0.83
VPS28-209ENST00000528142 ZNF513Q8N8E2 541 aaPredicted RBP20.24■□□□□ 0.83
VPS28-209ENST00000528142 CFAP61Q8NHU2 1237 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms