RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 AMZ2Q86W34 360 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 MCEMP1Q8IX19 187 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 CISD2Q8N5K1 135 aaKnown RBP10.27□□□□□ -0.77
CPSF1-203ENST00000527916 RNF10Q8N5U6 811 aaKnown RBP10.27□□□□□ -0.77
CPSF1-203ENST00000527916 UBL4BQ8N7F7 174 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 RASGEF1AQ8N9B8 481 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 TMEM102Q8N9M5 508 aaPredicted RBP10.27□□□□□ -0.77
CPSF1-203ENST00000527916 SIDT2Q8NBJ9 832 aaKnown RBP10.27□□□□□ -0.77
CPSF1-203ENST00000527916 ACRBPQ8NEB7 543 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 GDAP1Q8TB36 358 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 ZNF398Q8TD17 642 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 UBXN4Q92575 508 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 LRRC45Q96CN5 670 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 RUFY1Q96T51 708 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 NUDT9Q9BW91 350 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 C10orf88Q9H8K7 445 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 UGT1A7Q9HAW7 530 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 UGT1A10Q9HAW8 530 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 UGT1A8Q9HAW9 530 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 C5AR2Q9P296 337 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 EPHA6Q9UF33 1036 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 B3GNT3Q9Y2A9 372 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 PKDREJQ9NTG1 2253 aa10.27□□□□□ -0.77
CPSF1-203ENST00000527916 GOLGA6L9A6NEM1 432 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PDZK1P1A8MUH7 402 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 F5H423 210 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 KLHL41O60662 606 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 CPNE3O75131 537 aaKnown RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 POP7O75817 140 aaKnown RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 TIAF1O95411 115 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ALPPP05187 535 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 KLK3P07288 261 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PSMB4P28070 264 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 HADHAP40939 763 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 HALP42357 657 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ARL4DP49703 201 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 KLF1Q13351 362 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PARP6Q2NL67 630 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 KRTAP21-3Q3LHN1 58 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PLEKHN1Q494U1 663 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 GPRC6AQ5T6X5 926 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 LYPLAL1Q5VWZ2 237 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 IZUMO3Q5VZ72 239 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 METRNLQ641Q3 311 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 SP5Q6BEB4 398 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 DENND5AQ6IQ26 1287 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 IRGCQ6NXR0 463 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 TMEM220Q6QAJ8 160 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 FAM151BQ6UXP7 276 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ZGRF1Q86YA3 2104 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 TRAPPC5Q8IUR0 188 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 GLIS1Q8NBF1 620 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 HEXDCQ8WVB3 486 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ZFPM2Q8WW38 1151 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 MR1Q95460 341 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 LINC00615Q96LM1 132 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 SMAD5Q99717 465 aaKnown RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 FICDQ9BVA6 458 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 UNKQ9C0B0 810 aaKnown RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ILKAPQ9H0C8 392 aaPredicted RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 AGPAT4Q9NRZ5 378 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 SNX7Q9UNH6 387 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 DNAJC16Q9Y2G8 782 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 COPG1Q9Y678 874 aaKnown RBP10.26□□□□□ -0.77
CPSF1-203ENST00000527916 ARL5AQ9Y689 179 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 SLC30A1Q9Y6M5 507 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PIKFYVEQ9Y2I7 2098 aa10.26□□□□□ -0.77
CPSF1-203ENST00000527916 PCNX1Q96RV3 2341 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 MACROD2A1Z1Q3 448 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 MGAT4DA6NG13 374 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 DDX3YO15523 660 aaKnown RBP10.25□□□□□ -0.77
CPSF1-203ENST00000527916 PSMD3O43242 534 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 BUD23O43709 281 aaKnown RBP10.25□□□□□ -0.77
CPSF1-203ENST00000527916 SRP72O76094 671 aaKnown RBP10.25□□□□□ -0.77
CPSF1-203ENST00000527916 PRAMEF1O95521 474 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 FOLR1P15328 257 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 MSH3P20585 1137 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 RPL10P27635 214 aaKnown RBP10.25□□□□□ -0.77
CPSF1-203ENST00000527916 CA5AP35218 305 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 CTSCP53634 463 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 GSDMDP57764 484 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 XIAPP98170 497 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 LAMB3Q13751 1172 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 LONRF2Q1L5Z9 754 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 PLA2G4EQ3MJ16 856 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 VWA5B1Q5TIE3 1220 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 KCTD11Q693B1 232 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 AADACL2Q6P093 401 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 KLHL35Q6PF15 583 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 TMEM126BQ8IUX1 230 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 BEND7Q8N7W2 519 aaPredicted RBP10.25□□□□□ -0.77
CPSF1-203ENST00000527916 OR4K2Q8NGD2 314 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 OR8K5Q8NH50 307 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 CCDC110Q8TBZ0 833 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 ADAMTS17Q8TE56 1095 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 RSC1A1Q92681 617 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 CXorf40BQ96DE9 158 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 SGSM3Q96HU1 749 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 HES6Q96HZ4 224 aa10.25□□□□□ -0.77
CPSF1-203ENST00000527916 SLC41A2Q96JW4 573 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms