RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PTPRAP18433 802 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PCMT1P22061 227 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CPN2P22792 545 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ACVR2AP27037 513 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ELK4P28324 431 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GTF2E2P29084 291 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 MAPK4P31152 587 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SSTR4P31391 388 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PTPN7P35236 360 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 RORAP35398 523 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 EIF2S3P41091 472 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 POU3F4P49335 361 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PGDP52209 483 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SNAP25P60880 206 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 TSPAN5P62079 268 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 RPS6P62753 249 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 GABREP78334 506 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 TFAMQ00059 246 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 GRIK2Q13002 908 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 DUSP4Q13115 394 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GRM1Q13255 1194 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ASAH1Q13510 395 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 NCF4Q15080 339 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CYP27C1Q4G0S4 372 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PAN2Q504Q3 1202 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 LRRC24Q50LG9 513 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 C6orf141Q5SZD1 244 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SYT6Q5T7P8 510 aaPredicted RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 AADACL4Q5VUY2 407 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PLA2G4FQ68DD2 849 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 C3orf33Q6P1S2 294 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GJB7Q6PEY0 223 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 LMBR1LQ6UX01 489 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SPOCD1Q6ZMY3 1216 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PTAR1Q7Z6K3 402 aaPredicted RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 DEFB132Q7Z7B7 95 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 DDIASQ8IXT1 998 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 RDH10Q8IZV5 341 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 NLGN4XQ8N0W4 816 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 OR8H3Q8N146 312 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 C9orf62Q8N4C0 152 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 EMC1Q8N766 993 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 YIPF7Q8N8F6 280 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 NAT8LQ8N9F0 302 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ATG16L2Q8NAA4 619 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ZNF555Q8NEP9 628 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 OR52K2Q8NGK3 314 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GOT1L1Q8NHS2 421 aaPredicted RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 NSUN6Q8TEA1 469 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 FAR1Q8WVX9 515 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 DDX1Q92499 740 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 GTF3AQ92664 365 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 RIT1Q92963 219 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GPRASP2Q96D09 838 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SIPA1Q96FS4 1042 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 AURKBQ96GD4 344 aaPredicted RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 MARK4Q96L34 752 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 C10orf90Q96M02 699 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ORAI2Q96SN7 254 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 TCEAL7Q9BRU2 100 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 LXNQ9BS40 222 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 KATNAL1Q9BW62 490 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 POLR1EQ9GZS1 481 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 WNT5BQ9H1J7 359 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 DCSTAMPQ9H295 470 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 NCOR1P1Q9H4R4 102 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 LRRC4Q9HBW1 653 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ZBTB26Q9HCK0 441 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 SPAG4Q9NPE6 437 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ENTPD7Q9NQZ7 604 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 GSN-AS1Q9NRJ2 163 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CATSPERZQ9NTU4 200 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PNPOQ9NVS9 261 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CMTM6Q9NX76 183 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CTSFQ9UBX1 484 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 EPHA6Q9UF33 1036 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 CD300AQ9UGN4 299 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 NUFIP1Q9UHK0 495 aaKnown RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 TCEAL9Q9UHQ7 104 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 ADAM30Q9UKF2 790 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 MAGED2Q9UNF1 606 aaPredicted RBP5.72□□□□□ -1.49
CD44-225ENST00000527326 RAXQ9Y2V3 346 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 AFG3L2Q9Y4W6 797 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PTCH2Q9Y6C5 1203 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PCM1Q15154 2024 aa5.72□□□□□ -1.49
CD44-225ENST00000527326 PLIN4Q96Q06 1357 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 RGPD3A6NKT7 1758 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 RGPD4Q7Z3J3 1758 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 SYNJ2BP-COX16A0A087WUM0 186 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 RPS10-NUDT3A0A1W2PQS6 291 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 TCRBV9S1A1TA0A576 114 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 TRABD2BA6NFA1 517 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 EFCAB9A8MZ26 197 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 ERVV-1B6SEH8 477 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 H3BQ06 376 aaPredicted RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 AP3D1O14617 1153 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 PPM1DO15297 605 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 DHX15O43143 795 aaKnown RBP5.71□□□□□ -1.5
CD44-225ENST00000527326 AKR7A2O43488 359 aa5.71□□□□□ -1.5
CD44-225ENST00000527326 CHMP2AO43633 222 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms