RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	RNF224	P0DH78	156 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	EPHA2	P29317	976 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	GCH1	P30793	250 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	CHRNB4	P30926	498 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	COPB2	P35606	906 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	HSD17B4	P51659	736 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	ARSE	P51690	589 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	RPS18	P62269	152 aa	Known RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	GNB1	P62873	340 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	PRKAA1	Q13131	559 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	KRT33B	Q14525	404 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	RASA2	Q15283	850 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	NTRK2	Q16620	822 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	KRT79	Q5XKE5	535 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	ALS2CL	Q60I27	953 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	LINGO4	Q6UY18	593 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	C15orf39	Q6ZRI6	1047 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	MFSD6	Q6ZSS7	791 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	DAZL	Q92904	295 aa	Known RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	ERLEC1	Q96DZ1	483 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	PPIL3	Q9H2H8	161 aa	Known RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	SLC35C2	Q9NQQ7	365 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	ECHDC1	Q9NTX5	307 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	GIMAP4	Q9NUV9	329 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	PTTG2	Q9NZH5	202 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	NPAP1	Q9NZP6	1156 aa		4.28	□□□□□ -1.72
CD44-223	ENST00000526553	MRPL15	Q9P015	296 aa	Known RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	LARS	Q9P2J5	1176 aa	Known RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	SPIN1	Q9Y657	262 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-223	ENST00000526553	FAM170A	A1A519	330 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ELOVL7	A1L3X0	281 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	OR2A25	A4D2G3	310 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	PRR32	B1ATL7	298 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553		H7C0S8	307 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	SH2B2	O14492	632 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-223	ENST00000526553	GJB3	O75712	270 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	VPREB1	P12018	145 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ITGA3	P26006	1051 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	PSMC4	P43686	418 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	SIRPA	P78324	504 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	TMF1	P82094	1093 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	PLA2G7	Q13093	441 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	KIAA1644	Q3SXP7	199 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	HAUS6	Q7Z4H7	955 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	POC5	Q8NA72	575 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	MTERF3	Q96E29	417 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	RADIL	Q96JH8	1075 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	CNDP2	Q96KP4	475 aa	Known RBP	4.27	□□□□□ -1.73
CD44-223	ENST00000526553	LRR1	Q96L50	414 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	FAM81B	Q96LP2	452 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ASCL2	Q99929	193 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	RHNO1	Q9BSD3	238 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ABHD6	Q9BV23	337 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	MOV10L1	Q9BXT6	1211 aa	Known RBP	4.27	□□□□□ -1.73
CD44-223	ENST00000526553	SPATC1L	Q9H0A9	340 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	KCNK15	Q9H427	330 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	SH3GLB2	Q9NR46	395 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	PSD3	Q9NYI0	1048 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	HACL1	Q9UJ83	578 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	SLC7A7	Q9UM01	511 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	PLAGL1	Q9UM63	463 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ZNF148	Q9UQR1	794 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	CCDC180	Q9P1Z9	1646 aa		4.27	□□□□□ -1.73
CD44-223	ENST00000526553	ZNF541	Q9H0D2	1346 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PRSS51	A0A1B0GVH4	220 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553		A6NL46	340 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	HHLA1	C9JL84	531 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	CTDSP2	O14595	271 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	SSX4	O60224	188 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	CREG1	O75629	220 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	RPN1	P04843	607 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	APOA4	P06727	396 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PLA2G4B	P0C869	781 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	GNB3	P16520	340 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	ALDH4A1	P30038	563 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PNRC1	Q12796	327 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PRPF4B	Q13523	1007 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	TMEM266	Q2M3C6	531 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	ALDH1L2	Q3SY69	923 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	LCE1E	Q5T753	118 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	GRTP1	Q5TC63	336 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	GARNL3	Q5VVW2	1013 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	RPUSD3	Q6P087	351 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	NOTCH2NL	Q7Z3S9	236 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	ISCA2	Q86U28	154 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	LDB1	Q86U70	411 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	AACS	Q86V21	672 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	FAM9B	Q8IZU0	186 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	CPSF7	Q8N684	471 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PAPD5	Q8NDF8	572 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	SGK494	Q96LW2	274 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	ZMAT2	Q96NC0	199 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	KIFC3	Q9BVG8	833 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	MRPL1	Q9BYD6	325 aa	Known RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	OSGEPL1	Q9H4B0	414 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	RABEP2	Q9H5N1	569 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	PDE7B	Q9NP56	450 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	SIX2	Q9NPC8	291 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms