RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TNNT1P13805 278 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 HLA-DPA1P20036 260 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 PRLHRP49683 370 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 DENND5AQ6IQ26 1287 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 KLHL35Q6PF15 583 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 RANBP10Q6VN20 620 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 ADGRF3Q8IZF5 1079 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 OR4K2Q8NGD2 314 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 OR13C4Q8NGS5 318 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 OR8K5Q8NH50 307 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 PRR7Q8TB68 274 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 ZFPM2Q8WW38 1151 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 TTC25Q96NG3 672 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 QKIQ96PU8 341 aaKnown RBP eCLIP13.84□□□□□ -0.19
CPSF1-201ENST00000526271 SRPK1Q96SB4 655 aaKnown RBP13.84□□□□□ -0.19
CPSF1-201ENST00000526271 APOL2Q9BQE5 337 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 FAM96AQ9H5X1 160 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 XKR8Q9H6D3 395 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 C1GALT1Q9NS00 363 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 TFR2Q9UP52 801 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 PCDHGB7Q9Y5F8 929 aa13.84□□□□□ -0.19
CPSF1-201ENST00000526271 hCG_1818297A0A087WSY0 165 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 MSL3P1P0C860 447 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ITGAXP20702 1163 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ARL4DP49703 201 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ZNF140P52738 457 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-201ENST00000526271 GSDMDP57764 484 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 TCEAL1Q15170 157 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ZDHHC20Q5W0Z9 365 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 CYB5D1Q6P9G0 228 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 MRGPREQ86SM8 312 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 TRIM73Q86UV7 250 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 CFAP206Q8IYR0 622 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 CARFQ8N187 725 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 CISD2Q8N5K1 135 aaKnown RBP13.83□□□□□ -0.2
CPSF1-201ENST00000526271 PHC3Q8NDX5 983 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 OR52E1Q8NGJ3 308 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 CPT1BQ92523 772 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 FICDQ9BVA6 458 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ZCCHC2Q9C0B9 1178 aaKnown RBP13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ZNF552Q9H707 407 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ASB8Q9H765 288 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 COG4Q9H9E3 785 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ACTR5Q9H9F9 607 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-201ENST00000526271 SLC22A11Q9NSA0 550 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 SOHLH2Q9NX45 425 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 HACD3Q9P035 362 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 IMPACTQ9P2X3 320 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 ACSL5Q9ULC5 683 aa13.83□□□□□ -0.2
CPSF1-201ENST00000526271 IGLV3-16A0A075B6K0 115 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 AKR1B15C9JRZ8 316 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ZNF749O43361 778 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 DPM1O60762 260 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 UMODP07911 640 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ZFXP17010 805 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 MSH3P20585 1137 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 CDH3P22223 829 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 AKT1P31749 480 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ARHGAP25P42331 645 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 GCGRP47871 477 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 NR2C2P49116 596 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 PDE1BQ01064 536 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 MPP3Q13368 585 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ITGA9Q13797 1035 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 LONRF2Q1L5Z9 754 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 DEFB110Q30KQ9 67 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 KAZNQ674X7 775 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 CCDC70Q6NSX1 233 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 PID1Q7Z2X4 250 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 MAMDC2Q7Z304 686 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 TMEM102Q8N9M5 508 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ACVR1CQ8NER5 493 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 OR8K1Q8NGG5 319 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 KRT35Q92764 455 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 CLIP3Q96DZ5 547 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 GBP5Q96PP8 586 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 MAK16Q9BXY0 300 aaKnown RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 SPRTNQ9H040 489 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 SPHK1Q9NYA1 384 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 GPR83Q9NYM4 423 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 KLHL8Q9P2G9 620 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-201ENST00000526271 ICKQ9UPZ9 632 aa13.82□□□□□ -0.2
CPSF1-201ENST00000526271 STX7O15400 261 aaKnown RBP13.81□□□□□ -0.2
CPSF1-201ENST00000526271 MFAP3LO75121 409 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 DDAH2O95865 285 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 KLK3P07288 261 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-201ENST00000526271 TPM1P09493 284 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 SLC35G4P0C7Q5 338 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 RBL1P28749 1068 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 PEBP1P30086 187 aaKnown RBP13.81□□□□□ -0.2
CPSF1-201ENST00000526271 OTX2P32243 289 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 PREPP48147 710 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 BOP1Q14137 746 aaKnown RBP13.81□□□□□ -0.2
CPSF1-201ENST00000526271 TAF1AQ15573 450 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-201ENST00000526271 MED25Q71SY5 747 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 PPP1R32Q7Z5V6 425 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 CUZD1Q86UP6 607 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 TICAM1Q8IUC6 712 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 CNGA4Q8IV77 575 aa13.81□□□□□ -0.2
CPSF1-201ENST00000526271 NXPE1Q8N323 547 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms