RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 NLRP9Q7RTR0 991 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 TRIM73Q86UV7 250 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 RASGRP3Q8IV61 690 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 C2orf73Q8N5S3 287 aaPredicted RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 OR52E1Q8NGJ3 308 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ACTRT1Q8TDG2 376 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 KLHL6Q8WZ60 621 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ANP32BQ92688 251 aaKnown RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 PDLIM2Q96JY6 352 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 KIFC1Q9BW19 673 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 DDA1Q9BW61 102 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 IL22Q9GZX6 179 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 DDX47Q9H0S4 455 aaKnown RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 SRMSQ9H3Y6 488 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ZNF768Q9H5H4 540 aaKnown RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 VPS37BQ9H9H4 285 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 EPHA6Q9UF33 1036 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ANAPC5Q9UJX4 755 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 RIMKLBQ9ULI2 386 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ZNF106Q9H2Y7 1883 aaKnown RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 SPTBP11277 2137 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 SLC5A10A0PJK1 596 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 KLHL33A6NCF5 533 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 SLC9B1P1A6NJY1 282 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 BTN3A1O00481 513 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PHF2O75151 1096 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 NDUFS3O75489 264 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 SPAG6O75602 509 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 KIAA0754O94854 1291 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 FTH1P02794 183 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 TPBGLP0DKB5 382 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ATXN8OSP0DMR3 200 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 LIFP15018 202 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PVRP15151 417 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 NELFEP18615 380 aaKnown RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 ACADLP28330 430 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 FMO4P31512 558 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ARL4DP49703 201 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 RAB15P59190 212 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 MRPS25P82663 173 aaKnown RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 GPR19Q15760 415 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 CYP1B1Q16678 543 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ZNF789Q5FWF6 425 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PRAMEF17Q5VTA0 474 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 LYPLAL1Q5VWZ2 237 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PTRHD1Q6GMV3 140 aaKnown RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 ZNF449Q6P9G9 518 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 KLHL35Q6PF15 583 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PACS1Q6VY07 963 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PRSS42Q7Z5A4 293 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 OOSP2Q86WS3 158 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 FAM20CQ8IXL6 584 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 AGGF1Q8N302 714 aaeCLIP11.17□□□□□ -0.62
VCAN-212ENST00000515397 SIDT2Q8NBJ9 832 aaKnown RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 GALNT6Q8NCL4 622 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ACVR1CQ8NER5 493 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 SLC39A7Q92504 469 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 EXTL1Q92935 676 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 SLC41A2Q96JW4 573 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 TTC1Q99614 292 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ULBP3Q9BZM4 244 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 SEMA4CQ9C0C4 833 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 AKIRIN1Q9H9L7 192 aaPredicted RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 IL17BQ9UHF5 180 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 ASF1AQ9Y294 204 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 PCDHGA4Q9Y5G9 962 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 HEBP2Q9Y5Z4 205 aa11.17□□□□□ -0.62
VCAN-212ENST00000515397 MRPS18BQ9Y676 258 aaKnown RBP11.17□□□□□ -0.62
VCAN-212ENST00000515397 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 KRT87PA6NCN2 255 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 EIF4E1BA6NMX2 242 aaKnown RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 PRMT5O14744 637 aaPredicted RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 LIN7AO14910 233 aaPredicted RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 FANCGO15287 622 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 NKX2-8O15522 239 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 BANF1O75531 89 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 NTRK1P04629 796 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 CDH3P22223 829 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 F8A1P23610 371 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 CD82P27701 267 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 NDUFS1P28331 727 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 PRDX3P30048 256 aaKnown RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 CD151P48509 253 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 ATP1A2P50993 1020 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 EIF3BP55884 814 aaKnown RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 CDK16Q00536 496 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 RPA4Q13156 261 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 TUBB3Q13509 450 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 ATP1A1-AS1Q5TC04 95 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 PWWP2BQ6NUJ5 590 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 UNC5AQ6ZN44 842 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 AMIGO1Q86WK6 493 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 KLHL7Q8IXQ5 586 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 ADGRF3Q8IZF5 1079 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 NLGN4XQ8N0W4 816 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 NLGN4YQ8NFZ3 816 aaPredicted RBP11.16□□□□□ -0.62
VCAN-212ENST00000515397 ZFPM2Q8WW38 1151 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 IL17FQ96PD4 163 aa11.16□□□□□ -0.62
VCAN-212ENST00000515397 UBL7Q96S82 380 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms