RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 KLHL26Q53HC5 615 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 ARL13AQ5H913 290 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 IL23RQ5VWK5 629 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 FAM198BQ6UWH4 519 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 ASB18Q6ZVZ8 466 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF367Q7RTV3 350 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 TNS4Q8IZW8 715 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC13A3Q8WWT9 602 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 TNFRSF25Q93038 417 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 ARL11Q969Q4 196 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 C3orf49Q96BT1 292 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 PCDHB18PQ96TA0 734 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 TMEM134Q9H6X4 195 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 SPG21Q9NZD8 308 aa11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 CNOT6Q9ULM6 557 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 RUVBL1Q9Y265 456 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF701M0R085 212 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ACKR2O00590 384 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 DNAJB6O75190 326 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 STK16O75716 305 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CLCN4P51793 760 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CAV3P56539 151 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 RHDQ02161 417 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 MAD2L1BPQ15013 274 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 TGFBIQ15582 683 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF529Q6P280 563 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 OR10G2Q8NGC3 310 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 C5orf34Q96MH7 638 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 COL15A1P39059 1388 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 LRRTM2O43300 516 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 FAM189A1O60320 539 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 PCDH8O95206 1070 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 PKMP14618 531 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CXCR3P49682 368 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SMSP52788 366 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CDK10Q15131 360 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ERMP1Q7Z2K6 904 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 FAM35AQ86V20 835 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 C17orf64Q86WR6 236 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 HID1Q8IV36 788 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 COQ8AQ8NI60 647 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF563Q8TA94 476 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 C10orf82Q8WW14 230 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC7A6OSQ96CW6 309 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 MAELQ96JY0 434 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SH2D3AQ9BRG2 576 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 NDC1Q9BTX1 674 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 TUBB1Q9H4B7 451 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ACTR3BQ9P1U1 418 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CNTN6Q9UQ52 1028 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 EME2A4GXA9 379 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SPTLC1O15269 473 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ATG13O75143 517 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ERAL1O75616 437 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 C22orf31O95567 290 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CFL1P23528 166 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 RBMXP38159 391 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ENTPD1P49961 510 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 HES5Q5TA89 166 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 TMEM214Q6NUQ4 689 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 COPS5Q92905 334 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 PARK7Q99497 189 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SNRNP25Q9BV90 132 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 PRDM12Q9H4Q4 367 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 THG1LQ9NWX6 298 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SNTG2Q9NY99 539 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 COL20A1Q9P218 1284 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ADAMTS12P58397 1594 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 J3QRK9 145 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ACADMP11310 421 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC12A3P55017 1021 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 FGL2Q14314 439 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 DNM1P34Q6PK57 102 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ANKS1BQ7Z6G8 1248 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ZFPM1Q8IX07 1006 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 TSPEARQ8WU66 669 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 ZUFSPQ96AP4 578 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 FBXL8Q96CD0 374 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 MECRQ9BV79 373 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 CIPCQ9C0C6 399 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 RSPH9Q9H1X1 276 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 WASF3Q9UPY6 502 aa11.06□□□□□ -0.64
LIMCH1-208ENST00000508501 FAM149AA5PLN7 773 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 RHPN2P1A8MT19 583 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 AIPO00170 330 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 NARSO43776 548 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 IFNA5P01569 189 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 VARSP26640 1264 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SSR2P43308 183 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 GPR162Q16538 588 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 MPPE1Q53F39 396 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 CEP97Q8IW35 865 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 LGI2Q8N0V4 545 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 UBE2J2Q8N2K1 259 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 SPOCK2Q92563 424 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TAPBPLQ9BX59 468 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 TAS2R8Q9NYW2 309 aa11.05□□□□□ -0.64
LIMCH1-208ENST00000508501 ASB4Q9Y574 426 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms