RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SYT11Q9BT88 431 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 FAM167BQ9BTA0 163 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 TUBB6Q9BUF5 446 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 BRD8Q9H0E9 1235 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 LRMDAQ9H2I8 198 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 ACTL8Q9H568 366 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 DCLRE1BQ9H816 532 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 RMI1Q9H9A7 625 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 AKIRIN1Q9H9L7 192 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-213ENST00000492506 LHX9Q9NQ69 397 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 ZNF624Q9P2J8 865 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-213ENST00000492506 PADI1Q9ULC6 663 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 APCP25054 2843 aa12.89□□□□□ -0.35
HDAC3-213ENST00000492506 RCCD1A6NED2 376 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TMEM191CA6NGB0 347 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 ATMINO43313 823 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 NUAK1O60285 661 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 LRCH4O75427 683 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 UBXN7O94888 489 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 DDAH2O95865 285 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 CCNYL3P0C7X3 344 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 SLC2A4P14672 509 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 XRCC1P18887 633 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 AMPD1P23109 780 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 CLCNKAP51800 687 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 PGDP52209 483 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 MRPL49Q13405 166 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 INPP5JQ15735 1006 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 UAP1Q16222 522 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 MUM1Q2TAK8 710 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 EIF2S3LQ2VIR3 472 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 HENMT1Q5T8I9 393 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 MARC1Q5VT66 337 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 OR52E8Q6IFG1 317 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TMEM26Q6ZUK4 368 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 MAMDC2Q7Z304 686 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TMC3Q7Z5M5 1100 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TICAM1Q8IUC6 712 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 RAVER1Q8IY67 606 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 ALDH16A1Q8IZ83 802 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TEX26Q8N6G2 289 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 Q8NA96 180 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 PPFIBP2Q8ND30 876 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 KLHL6Q8WZ60 621 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 TGM7Q96PF1 710 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 NDNQ99608 321 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 ROPN1BQ9BZX4 212 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 ROPN1Q9HAT0 212 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 PARVAQ9NVD7 372 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 LNPEPQ9UIQ6 1025 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 PAIP2BQ9ULR5 123 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 ZNF232Q9UNY5 417 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 PCDHGA9Q9Y5G4 932 aaKnown RBP12.88□□□□□ -0.35
HDAC3-213ENST00000492506 SPTBP11277 2137 aa12.88□□□□□ -0.35
HDAC3-213ENST00000492506 FAM187AA6NFU0 413 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 C21orf140B9A014 251 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 PGRMC1O00264 195 aaKnown RBP12.87□□□□□ -0.35
HDAC3-213ENST00000492506 GRID2O43424 1007 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 RAD51CO43502 376 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 PRPSAP2O60256 369 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 UNC5CO95185 931 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CLDN7O95471 211 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 PRLP01236 227 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CHN1P15882 459 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 IL1R2P27930 398 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 SLC19A1P41440 591 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 SERPINB8P50452 374 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CDH6P55285 790 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 KCNJ2P63252 427 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CHAF1BQ13112 559 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 UGT8Q16880 541 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 MEI1Q5TIA1 1274 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CEP128Q6ZU80 1094 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CCDC80Q76M96 950 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 PRSS42Q7Z5A4 293 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 POLNQ7Z5Q5 900 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 LRRC34Q8IZ02 419 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 BBS5Q8N3I7 341 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 AVL9Q8NBF6 648 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 TCTN2Q96GX1 697 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 LYSMD1Q96S90 227 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 ELAC2Q9BQ52 826 aaKnown RBP12.87□□□□□ -0.35
HDAC3-213ENST00000492506 SLC25A23Q9BV35 468 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CARD9Q9H257 536 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 NT5MQ9NPB1 228 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 CASS4Q9NQ75 786 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 KLHL14Q9P2G3 628 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 UTP11Q9Y3A2 253 aaKnown RBP12.87□□□□□ -0.35
HDAC3-213ENST00000492506 PCSK5Q92824 1860 aa12.87□□□□□ -0.35
HDAC3-213ENST00000492506 RGS16O15492 202 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 MT-ND3P03897 115 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 KRT16P08779 473 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 TPBGLP0DKB5 382 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 TCF4P15884 667 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 ZNF8P17098 575 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 SPINT3P49223 89 aa12.86□□□□□ -0.35
HDAC3-213ENST00000492506 RPL26P61254 145 aaKnown RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 RPS18P62269 152 aaKnown RBP12.86□□□□□ -0.35
HDAC3-213ENST00000492506 IL10RAQ13651 578 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms