RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RGS4P49798 205 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 DAG1Q14118 895 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 NKG7Q16617 165 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 MAPKAPK3Q16644 382 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 INO80DQ53TQ3 878 aaPredicted RBP17.61■□□□□ 0.41
VIM-206ENST00000487938 SPANXN4Q5MJ08 99 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 CERS6Q6ZMG9 384 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 NPAS4Q8IUM7 802 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 HS3ST5Q8IZT8 346 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 OVCA2Q8WZ82 227 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 HHIPL1Q96JK4 782 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 ZBTB18Q99592 522 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 IL26Q9NPH9 171 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 OPTCQ9UBM4 332 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 SRRDQ9UH36 339 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 ZNF490Q9ULM2 529 aaPredicted RBP17.61■□□□□ 0.41
VIM-206ENST00000487938 OARD1Q9Y530 152 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 A0A1W2PPW3 197 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 LOC730098B7Z3J9 87 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 H0YAE9 185 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 RGS14O43566 566 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 NOBOXO60393 691 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 ALPLP05186 524 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 KLHL35Q6PF15 583 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 PRR23BQ6ZRT6 265 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 PHACTR4Q8IZ21 702 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 APCDD1Q8J025 514 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 OR8J3Q8NGG0 315 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 ABTB1Q969K4 478 aaPredicted RBP17.61■□□□□ 0.41
VIM-206ENST00000487938 CD244Q9BZW8 370 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 DPY30Q9C005 99 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 ING2Q9H160 280 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 RHBDL2Q9NX52 303 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 MTRRQ9UBK8 725 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 GNPTGQ9UJJ9 305 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 G3V2T6 193 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 IFRD1O00458 451 aaPredicted RBP17.6■□□□□ 0.41
VIM-206ENST00000487938 ULK1O75385 1050 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 THRBP10828 461 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 DGKAP23743 735 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 HLCSP50747 726 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SMAD3P84022 425 aaKnown RBP17.6■□□□□ 0.41
VIM-206ENST00000487938 CYP4F3Q08477 520 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 NFATC2Q13469 925 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 GTDC1Q4AE62 458 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 FGD3Q5JSP0 725 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 KIAA1841Q6NSI8 718 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 DHRS4L2Q6PKH6 230 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 RBFAQ8N0V3 343 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 CLSTN3Q9BQT9 956 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 VN1R3Q9BXE9 311 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 ABCG8Q9H221 673 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 ADNPQ9H2P0 1102 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SLC25A37Q9NYZ2 338 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 ZNF701M0R085 212 aaPredicted RBP17.6■□□□□ 0.41
VIM-206ENST00000487938 PRSS23O95084 383 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 CST1P01037 141 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 CD247P20963 164 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 DCKP27707 260 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 AKT1P31749 480 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 HNF1BP35680 557 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 C16orf72Q14CZ0 275 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 IMPG1Q17R60 797 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 ELMSAN1Q6PJG2 1045 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SUSD1Q6UWL2 747 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SNX20Q7Z614 316 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 MSRB3Q8IXL7 192 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 RGL4Q8IZJ4 473 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 ZBTB2Q8N680 514 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SLC22A17Q8WUG5 538 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 SGCDQ92629 289 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 RHBDF1Q96CC6 855 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 TOR3AQ9H497 397 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 OR51B4Q9Y5P0 310 aa17.6■□□□□ 0.41
VIM-206ENST00000487938 MATN1P21941 496 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 GNPDA1P46926 289 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 ALDH7A1P49419 539 aaKnown RBP17.59■□□□□ 0.41
VIM-206ENST00000487938 CDH18Q13634 790 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 CHRNA6Q15825 494 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 SULT1C3Q6IMI6 304 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 ZDHHC13Q8IUH4 622 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 ADGRG2Q8IZP9 1017 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 SLC43A3Q8NBI5 491 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 LEMD2Q8NC56 503 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 THAP11Q96EK4 314 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 TMEM175Q9BSA9 504 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 UGT2B28Q9BY64 529 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 GORASP2Q9H8Y8 452 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 FANCEQ9HB96 536 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 LATS2Q9NRM7 1088 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 SLC6A13Q9NSD5 602 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 CRLS1Q9UJA2 301 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.59■□□□□ 0.41
VIM-206ENST00000487938 ARVCFO00192 962 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 GNGT2O14610 69 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 PGRP06401 933 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 BPIP17213 487 aa17.59■□□□□ 0.41
VIM-206ENST00000487938 RPS3P23396 243 aaKnown RBP eCLIP17.59■□□□□ 0.415e-7■□□□□ 10.4
VIM-206ENST00000487938 ZXDBP98169 803 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms