RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 CEP68Q76N32 757 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 SPATS2Q86XZ4 545 aaKnown RBP17.18■□□□□ 0.34
UPF3A-206ENST00000480362 SLC22A9Q8IVM8 553 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 FBXO39Q8N4B4 442 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 LRRC8CQ8TDW0 803 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 CCDC126Q96EE4 140 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 PHF21BQ96EK2 531 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 TRIM54Q9BYV2 358 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 WWP1Q9H0M0 922 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 PARVBQ9HBI1 364 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 TRNAU1APQ9NX07 287 aaKnown RBP17.18■□□□□ 0.34
UPF3A-206ENST00000480362 ZSCAN32Q9NX65 697 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 NCKIPSDQ9NZQ3 722 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 PDE10AQ9Y233 779 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 ST14Q9Y5Y6 855 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 THADAQ6YHU6 1953 aa17.18■□□□□ 0.34
UPF3A-206ENST00000480362 TCP11X1B4DZS4 312 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 FFAR2O15552 330 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 KLK8O60259 260 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 SNX2O60749 519 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 IPO13O94829 963 aaKnown RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 GUCA1CO95843 209 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 S100BP04271 92 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ENO2P09104 434 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CYP2A7P20853 494 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 RPL10P27635 214 aaKnown RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ACADLP28330 430 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CNR2P34972 360 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 MAPK9P45984 424 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 RPIAP49247 311 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CSNK1EP49674 416 aaKnown RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CLCNKAP51800 687 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 PRKAA2P54646 552 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 DNAJB13P59910 316 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ASPHQ12797 758 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 LRP8Q14114 963 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 TCEA2Q15560 299 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CES4AQ5XG92 561 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ATG16L1Q676U5 607 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 RGS9BPQ6ZS82 235 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 PDZD3Q86UT5 571 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 PARGQ86W56 976 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 PTGR2Q8N8N7 351 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 SPDYE1Q8NFV5 336 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CCL4L1Q8NHW4 92 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 RAB3IL1Q8TBN0 382 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 MCOLN3Q8TDD5 553 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 GATA5Q9BWX5 397 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ZDHHC5Q9C0B5 715 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 TCEAL2Q9H3H9 227 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-206ENST00000480362 CAAP1Q9H8G2 361 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 RDH14Q9HBH5 336 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 NUDT4Q9NZJ9 180 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 KLF15Q9UIH9 416 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 TMCO1Q9UM00 188 aa17.17■□□□□ 0.34
UPF3A-206ENST00000480362 ARHGEF33A8MVX0 844 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 IFRD1O00458 451 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 VILLO15195 856 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 SHOX2O60902 331 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 CATP04040 527 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 SERPINE1P05121 402 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 HIST1H2AGP0C0S8 130 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 HIST1H2ADP20671 130 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 AK4P27144 223 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 MAP4P27816 1152 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 BLKP51451 505 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 AFF3P51826 1226 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 NAGLUP54802 743 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 NXPH1P58417 271 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 NFKB2Q00653 900 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 STX3Q13277 289 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 CAPRIN2Q6IMN6 1127 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 RAB44Q7Z6P3 723 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 PHACTR4Q8IZ21 702 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 OR6Y1Q8NGX8 325 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 SKA1Q96BD8 255 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 MOCOSQ96EN8 888 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 ZC3H10Q96K80 434 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 HIST1H2AHQ96KK5 128 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 RMDN2Q96LZ7 410 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 HIST1H2AJQ99878 128 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 EGFL8Q99944 293 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 H2AFJQ9BTM1 129 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 C11orf16Q9NQ32 467 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 ACSS2Q9NR19 701 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 DNAJC28Q9NX36 388 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 WDR37Q9Y2I8 494 aa17.16■□□□□ 0.34
UPF3A-206ENST00000480362 ATXN2Q99700 1313 aaKnown RBP17.16■□□□□ 0.34
UPF3A-206ENST00000480362 LRP4O75096 1905 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 PDZK1P1A8MUH7 402 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 KLF11O14901 512 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 H2AFYO75367 372 aaKnown RBP17.15■□□□□ 0.34
UPF3A-206ENST00000480362 C1orf105O95561 183 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 SLC35G4P0C7Q5 338 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 CTSEP14091 401 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 JUNDP17535 347 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 IMPDH1P20839 514 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 BDKRB1P46663 353 aa17.15■□□□□ 0.34
UPF3A-206ENST00000480362 ALDH18A1P54886 795 aaKnown RBP17.15■□□□□ 0.34
UPF3A-206ENST00000480362 C21orf59P57076 290 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms