RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LOC285095A0A1B0GVY8 99 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC66A2RUB6 948 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 BTNL10A8MVZ5 291 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 H7C0C1 242 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 APOC4-APOC2K7ER74 178 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 KIR2DS3K7RE56 304 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HGSO14964 777 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 PPM1DO15297 605 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 NVLO15381 856 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SUV39H1O43463 412 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 B4GAT1O43505 415 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC25A14O95258 325 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 EPOP01588 193 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 APOC2P02655 101 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HGFP14210 728 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF8P17098 575 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 BPIP17213 487 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CD1CP29017 333 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CTNNA1P35221 906 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HMGCLP35914 325 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CETN2P41208 172 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ATP5OP48047 213 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 KCNC1P48547 511 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 MARCKSL1P49006 195 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 WNT3AP56704 352 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HHEXQ03014 270 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ADCY2Q08462 1091 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 MPP3Q13368 585 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SQSTM1Q13501 440 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TRA2AQ13595 282 aaKnown RBP eCLIP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 KIR2DS5Q14953 304 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 NOMO1Q15155 1222 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC1A5Q15758 541 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM182AQ5T1J6 154 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ARHGAP40Q5TG30 622 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ZDHHC20Q5W0Z9 365 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 IYDQ6PHW0 289 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CRTC3Q6UUV7 619 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 KDELC1Q6UW63 502 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 BBS12Q6ZW61 710 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 USP53Q70EK8 1073 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TMPRSS9Q7Z410 1059 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ADGRG6Q86SQ4 1221 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC9B2Q86UD5 537 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF567Q8N184 647 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 AVL9Q8NBF6 648 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 OR4D9Q8NGE8 314 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 OR10G6Q8NH81 332 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC37A2Q8TED4 501 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 GLYATL1Q969I3 302 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SH3KBP1Q96B97 665 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 PLEKHG4BQ96PX9 1271 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 FCRL5Q96RD9 977 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 NUDT22Q9BRQ3 303 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HEMGNQ9BXL5 484 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 FSD1LQ9BXM9 530 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 B3GNT4Q9C0J1 378 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 OR2AG1Q9H205 316 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TRABDQ9H4I3 376 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 CPNE5Q9HCH3 593 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TRIM39Q9HCM9 518 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SARS2Q9NP81 518 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 HACD3Q9P035 362 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ATXN10Q9UBB4 475 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TBC1D29Q9UFV1 150 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 RSPH14Q9UHP6 348 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 ACSL6Q9UKU0 697 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 EFR3BQ9Y2G0 817 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 PRKAB1Q9Y478 270 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 PCDHA3Q9Y5H8 950 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 PCYT1BQ9Y5K3 369 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 EPN1Q9Y6I3 576 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 TRBV23OR9-2A0A075B6M9 112 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PRAMEF33A0A0G2JMD5 474 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 IGHV5-10-1A0A0J9YXX1 117 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 MACROD2A1Z1Q3 448 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 OR5K4A6NMS3 321 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 F5H423 210 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 AGRPO00253 132 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 AURKAO14965 403 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CHUKO15111 745 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 KMOO15229 486 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PJA2O43164 708 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 DUX1O43812 170 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 VEGFDO43915 354 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 SNX2O60749 519 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PRAMEF10O60809 474 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PPFIA2O75334 1257 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF189O75820 626 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ANXA9O76027 345 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 STK10O94804 968 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 TJP3O95049 919 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 EML2O95834 649 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 THRAP10827 490 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 LIPCP11150 499 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 F3P13726 295 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ITIH1P19827 911 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 HLA-DPA1P20036 260 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CTNNA2P26232 953 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms