RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 CMTM6Q9NX76 183 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 CD300AQ9UGN4 299 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 SARDHQ9UL12 918 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 V9GYQ6 96 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 ASPDHA6ND91 283 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 FADS2P1A8MWK0 482 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 WASH3PC4AMC7 463 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 FXYD1O00168 92 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 LSM1O15116 133 aaKnown RBP11.54□□□□□ -0.56
VTA1-203ENST00000452973 SEC22BO75396 215 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 HNRNPA1P09651 372 aaKnown RBP eCLIP11.54□□□□□ -0.56
VTA1-203ENST00000452973 ELFN1P0C7U0 828 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 NCK1P16333 377 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 NAA20P61599 178 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 ADGRE1Q14246 886 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 NRF1Q16656 503 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 LILRA3Q8N6C8 439 aaPredicted RBP11.54□□□□□ -0.56
VTA1-203ENST00000452973 CELF5Q8N6W0 485 aaKnown RBP11.54□□□□□ -0.56
VTA1-203ENST00000452973 HERVK_113Q902F9 699 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 INTS7Q9NVH2 962 aaKnown RBP11.54□□□□□ -0.56
VTA1-203ENST00000452973 TRANK1O15050 2925 aa11.54□□□□□ -0.56
VTA1-203ENST00000452973 SCN8AQ9UQD0 1980 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 PRRT4C9JH25 899 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 SLC9A3R1O14745 358 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 RNASEH1O60930 286 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 WDR47O94967 919 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 MTHFD1P11586 935 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 PSMC3P17980 439 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 AOAHP28039 575 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 NRIP1P48552 1158 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 GPM6BQ13491 265 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 MED21Q13503 144 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 RCAN2Q14206 197 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 DMC1Q14565 340 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 CYP20A1Q6UW02 462 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 TRIM74Q86UV6 250 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 CANT1Q8WVQ1 401 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 PPP2R3CQ969Q6 453 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 EME1Q96AY2 570 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 PPM1MQ96MI6 270 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 TRIM54Q9BYV2 358 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 IGFLR1Q9H665 355 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 SCOCQ9UIL1 159 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 RIMS3Q9UJD0 308 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 USP22Q9UPT9 525 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 EME2A4GXA9 379 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 CFAP99D6REC4 459 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 TIPRLO75663 272 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 RSL1D1O76021 490 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 ATP6V1B2P21281 511 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 PREPP48147 710 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 MRPS35P82673 323 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 PRKG2Q13237 762 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 ZNF284Q2VY69 593 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 FNDC3BQ53EP0 1204 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 ZNF805Q5CZA5 627 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 CMPK2Q5EBM0 449 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 P2RY13Q9BPV8 354 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 HOPXQ9BPY8 73 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 SLC22A14Q9Y267 594 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 HELZP42694 1942 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 AKAP10O43572 662 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 PTPN5P54829 565 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 RHDQ02161 417 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 ZXDCQ2QGD7 858 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 PTCHD3Q3KNS1 767 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 C9orf50Q5SZB4 431 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 OGFRL1Q5TC84 451 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 DNAJC14Q6Y2X3 702 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 GET4Q7L5D6 327 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 RALGPS2Q86X27 583 aaPredicted RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 AP2M1Q96CW1 435 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 GPATCH1Q9BRR8 931 aaKnown RBP11.53□□□□□ -0.56
VTA1-203ENST00000452973 PARVBQ9HBI1 364 aa11.53□□□□□ -0.56
VTA1-203ENST00000452973 SMNDC1O75940 238 aaKnown RBP eCLIP11.52□□□□□ -0.57
VTA1-203ENST00000452973 UQCRBP14927 111 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 ZNF30P17039 623 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 HOXA9P31269 272 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 ZFP36L2P47974 494 aaKnown RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 CTSCP53634 463 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 FOLH1Q04609 750 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 TSTA3Q13630 321 aaPredicted RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 FAM78AQ5JUQ0 283 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 C8orf82Q6P1X6 216 aaPredicted RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 HACD2Q6Y1H2 254 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 PARS2Q7L3T8 475 aaKnown RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 RGL4Q8IZJ4 473 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 RNF175Q8N4F7 328 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 ZNF557Q8N988 423 aaPredicted RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 LEMD2Q8NC56 503 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 OTUB2Q96DC9 234 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 BRINP2Q9C0B6 783 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 SLC52A3Q9NQ40 469 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 LEF1Q9UJU2 399 aaPredicted RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 PRSS51A0A1B0GVH4 220 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 CASQ2O14958 399 aaPredicted RBP11.52□□□□□ -0.57
VTA1-203ENST00000452973 RGS14O43566 566 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 TSPAN6O43657 245 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 SH3BGRLO75368 114 aa11.52□□□□□ -0.57
VTA1-203ENST00000452973 ADH1CP00326 375 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms