RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 YIPF4Q9BSR8 244 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 SMPD3Q9NY59 655 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 CNTN6Q9UQ52 1028 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 DMTF1Q9Y222 760 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 IGKV6D-41A0A0C4DH26 115 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 TCRBV7S3A2A0A539 114 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 TMEM63AO94886 807 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 CPN2P22792 545 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 DNAJB7Q7Z6W7 309 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 KBTBD7Q8WVZ9 684 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 TTYH3Q9C0H2 523 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 KCNN2Q9H2S1 579 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 GPD2P43304 727 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 PCBP2Q15366 365 aaKnown RBP eCLIP16.92■□□□□ 0.39e-9■■■■■ 31
PTPRF-209ENST00000438120 PGBD2Q6P3X8 592 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 MRPS30Q9NP92 439 aaKnown RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 ING4Q9UNL4 249 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 NIPSNAP2O75323 286 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 ACP5P13686 325 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 KCNA5P22460 613 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 IL1R2P27930 398 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CNTD1Q8N815 330 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CHST4Q8NCG5 386 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 PJA1Q8NG27 643 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CFAP20Q9Y6A4 193 aaKnown RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 NME6O75414 186 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 ASLP04424 464 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 C8GP07360 202 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 FUT4P22083 530 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 BNIP1Q12981 228 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 GANABQ14697 944 aaKnown RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CARD16Q5EG05 197 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 RNF220Q5VTB9 566 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 MMAAQ8IVH4 418 aaKnown RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 HMGB4Q8WW32 186 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 UNC93B1Q9H1C4 597 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 OR51V1Q9H2C8 321 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 DMAC2Q9NW81 257 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 C1orf109Q9NX04 203 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 GNALP38405 381 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 MYBPC3Q14896 1274 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 FEM1AQ9BSK4 669 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 DENND2DQ9H6A0 471 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 PHF24Q9UPV7 400 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CXCR6O00574 342 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 IFNA6P05013 189 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 PRR5P85299 388 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 LEMD2Q8NC56 503 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 EBF4Q9BQW3 602 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 PNPLA8Q9NP80 782 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 TULP2O00295 520 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CCNB2O95067 398 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 DDX6P26196 483 aaKnown RBP eCLIP16.91■□□□□ 0.37e-7■■■■■ 28.8
PTPRF-209ENST00000438120 PEX2P28328 305 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 SLC10A7Q0GE19 358 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 HEPACAMQ14CZ8 416 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 SLC9B1Q4ZJI4 515 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 ENPP7Q6UWV6 458 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 CTU1Q7Z7A3 348 aaKnown RBP16.91■□□□□ 0.3
PTPRF-209ENST00000438120 RIPOR3Q96MK2 946 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 MINDY3Q9H8M7 445 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 GRHL1Q9NZI5 618 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 TLR6Q9Y2C9 796 aa16.91■□□□□ 0.3
PTPRF-209ENST00000438120 SLC7A4O43246 635 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 RPS14P62263 151 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 PTGES3Q15185 160 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 PIGXQ8TBF5 258 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 NUS1Q96E22 293 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TRMT61BQ9BVS5 477 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TRIM3O75382 744 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 IL7RP16871 459 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TXNDC8Q6A555 127 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 MEIOBQ8N635 442 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 COX18Q8N8Q8 333 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TAPBPLQ9BX59 468 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 RWDD3Q9Y3V2 267 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 MRC1P22897 1456 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 IRGMA1A4Y4 181 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 IRAK2O43187 625 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 KERAO60938 352 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 AZGP1P25311 298 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 S100GP29377 79 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 DNASE1L1P49184 302 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 OLR1P78380 273 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TXNRD3NBQ6F5E7 133 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 AMZ2Q86W34 360 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 GPR151Q8TDV0 419 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 DIRAS2Q96HU8 199 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 RIOK2Q9BVS4 552 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 PIGVQ9NUD9 493 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 DNAAF2Q9NVR5 837 aaKnown RBP16.9■□□□□ 0.3
PTPRF-209ENST00000438120 IGSF9Q9P2J2 1179 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 B3GALT2O43825 422 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 WFS1O76024 890 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 ACTR1BP42025 376 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 ACTR1AP61163 376 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 PAQR3Q6TCH7 311 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 HPS1Q92902 700 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 SLC35G5Q96KT7 338 aa16.9■□□□□ 0.3
PTPRF-209ENST00000438120 TWNKQ96RR1 684 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms