RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RPAP3Q9H6T3 665 aaPredicted RBP4.06□□□□□ -1.76
HMGB3-203ENST00000430118 ANKZF1Q9H8Y5 726 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 TRPV4Q9HBA0 871 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 EPB41L5Q9HCM4 733 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 SEMA4GQ9NTN9 838 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 MTRRQ9UBK8 725 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 JRKLQ9Y4A0 524 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 STON1Q9Y6Q2 735 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 MYO15AQ9UKN7 3530 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 COL4A4P53420 1690 aaPredicted RBP4.06□□□□□ -1.76
HMGB3-203ENST00000430118 WDFY4Q6ZS81 3184 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 C5orf42Q9H799 3197 aa4.06□□□□□ -1.76
HMGB3-203ENST00000430118 CACNA1FO60840 1977 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TRBV5-3A0A0A0MS03 114 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 URADA6NGE7 173 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 LINC01548A6NM66 108 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TLX3O43711 291 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 FOXD2O60548 495 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 FLOT1O75955 427 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CIAO1O76071 339 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TGDSO95455 350 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CLDN7O95471 211 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 C22orf31O95567 290 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GH2P01242 217 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 KLKB1P03952 638 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 IL9P15248 144 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CASTP20810 708 aaKnown RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 MAOAP21397 527 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TNFSF8P32971 234 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 IL15P40933 162 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 FASLGP48023 281 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 METAP2P50579 478 aaKnown RBP eCLIP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CCL23P55773 120 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 SORDQ00796 357 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 MECOMQ03112 1051 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GRIK2Q13002 908 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 NEDD9Q14511 834 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 SNAPC1Q16533 368 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 IGSF11Q5DX21 431 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 HERC4Q5GLZ8 1057 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GGNBP1Q5YKI7 109 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 HEPHL1Q6MZM0 1159 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CLEC17AQ6ZS10 378 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 HAUS6Q7Z4H7 955 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 DNAJB7Q7Z6W7 309 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 AMIGO2Q86SJ2 522 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 IQCHQ86VS3 1027 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 LRRC57Q8N9N7 239 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 IQUBQ8NA54 791 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 PRSS33Q8NF86 280 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 SEMA6DQ8NFY4 1073 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 OR8K5Q8NH50 307 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TMEM18Q96B42 140 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 LRRC3BQ96PB8 259 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 AGAP2Q99490 1192 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GPATCH1Q9BRR8 931 aaKnown RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 THUMPD3Q9BV44 507 aaKnown RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 NUP85Q9BW27 656 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GPR88Q9GZN0 384 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 KLK15Q9H2R5 256 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 SLCO5A1Q9H2Y9 848 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 KCNK15Q9H427 330 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 MKKSQ9NPJ1 570 aaPredicted RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CYSLTR2Q9NS75 346 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 TRMT1Q9NXH9 659 aaKnown RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 KLHL13Q9P2N7 655 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 UTS2RQ9UKP6 389 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 ACAD8Q9UKU7 415 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 R3HDM2Q9Y2K5 976 aaKnown RBP4.05□□□□□ -1.76
HMGB3-203ENST00000430118 SNX5Q9Y5X3 404 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CLIC4Q9Y696 253 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 GBF1Q92538 1859 aa4.05□□□□□ -1.76
HMGB3-203ENST00000430118 CHD9Q3L8U1 2897 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 A0A087WV48 116 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 EDDM13A0A1B0GTR0 161 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ATP2A1O14983 1001 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 CNOT3O75175 753 aaKnown RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PPFIA2O75334 1257 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 FTCDO95954 541 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MYOGP15173 224 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 GJA1P17302 382 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 NR2F2P24468 414 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ATP5F1P24539 256 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PEX19P40855 299 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MATR3P43243 847 aaKnown RBP eCLIP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SUOXP51687 545 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ADORA2A-AS1P86434 159 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TRAF1Q13077 416 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 CAMK2DQ13557 499 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MORF4L2Q15014 288 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TYSND1Q2T9J0 566 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ZNF805Q5CZA5 627 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PPP6R3Q5H9R7 873 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PIK3CD-AS1Q5SR53 167 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 C6orf10Q5SRN2 563 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SIGIRRQ6IA17 410 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PLBD1Q6P4A8 553 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TRAT1Q6PIZ9 186 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 Q6ZPA2 131 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MTSS1LQ765P7 747 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms