RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CETN2P41208 172 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 GSDMDP57764 484 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 COPS2P61201 443 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 PTCHD3Q3KNS1 767 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 NADK2Q4G0N4 442 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 LCN10Q6JVE6 187 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 AADACL2Q6P093 401 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 ZNF449Q6P9G9 518 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 RANBP10Q6VN20 620 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 TAS2R42Q7RTR8 314 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 SYTL1Q8IYJ3 562 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 DSELQ8IZU8 1212 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 SLC38A9Q8NBW4 561 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 OR52E1Q8NGJ3 308 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 CPT1CQ8TCG5 803 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 ZFPM2Q8WW38 1151 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 N4BP2L2Q92802 583 aaPredicted RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 LINC00615Q96LM1 132 aaPredicted RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 NRTNQ99748 197 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 XKR8Q9H6D3 395 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 ACTR5Q9H9F9 607 aaPredicted RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 LATS2Q9NRM7 1088 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 C1GALT1Q9NS00 363 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 G3BP2Q9UN86 482 aaKnown RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 SHANK1Q9Y566 2161 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 A6NL46 340 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 MEN1O00255 615 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 ZNF185O15231 689 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 IPO7O95373 1038 aaKnown RBP14.09□□□□□ -0.15
SDC1-204ENST00000429035 RECKO95980 971 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 GP1BBP13224 206 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 GNLYP22749 145 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 CDKN1CP49918 316 aaPredicted RBP14.09□□□□□ -0.15
SDC1-204ENST00000429035 PRKG2Q13237 762 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 DEFB110Q30KQ9 67 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 CAPRIN2Q6IMN6 1127 aaKnown RBP14.09□□□□□ -0.15
SDC1-204ENST00000429035 SARM1Q6SZW1 724 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 ARHGEF18Q6ZSZ5 1173 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 SERPINA9Q86WD7 417 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 CARFQ8N187 725 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 TAB3Q8N5C8 712 aaPredicted RBP14.09□□□□□ -0.15
SDC1-204ENST00000429035 PHC3Q8NDX5 983 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 OR1L3Q8NH93 324 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 HEXDCQ8WVB3 486 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 MFRPQ9BY79 579 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 PIH1D1Q9NWS0 290 aaKnown RBP14.09□□□□□ -0.15
SDC1-204ENST00000429035 IRAK4Q9NWZ3 460 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 ZDHHC3Q9NYG2 299 aa14.09□□□□□ -0.15
SDC1-204ENST00000429035 RP1L1Q8IWN7 2480 aaPredicted RBP14.08□□□□□ -0.15
SDC1-204ENST00000429035 FLNCQ14315 2725 aa14.08□□□□□ -0.15
SDC1-204ENST00000429035 ESPL1Q14674 2120 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 SEC16AO15027 2179 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 SOWAHDA6NJG2 315 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 C2orf74A8MZ97 194 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 C9J4A7 227 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 E7EQ34 232 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 BTN3A3O00478 584 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 TMEM63AO94886 807 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 AGFG2O95081 481 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 TPH1P17752 444 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 ACRV1P26436 265 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PDHA2P29803 388 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PRDX3P30048 256 aaKnown RBP14.08□□□□□ -0.16
SDC1-204ENST00000429035 OTX2P32243 289 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 CD97P48960 835 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 RWDD2BP57060 319 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 RAPSNQ13702 412 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 LAMB3Q13751 1172 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 POU6F1Q14863 301 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 BRD3Q15059 726 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 KYNUQ16719 465 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PLEKHS1Q5SXH7 462 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 IZUMO3Q5VZ72 239 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 FAM198BQ6UWH4 519 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 TRIM73Q86UV7 250 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 CCDC170Q8IYT3 715 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PPP1R2P1Q96PQ5 205 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 LRRC4CQ9HCJ2 640 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PCMTD2Q9NV79 361 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 ACTR10Q9NZ32 417 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 TCFL5Q9UL49 500 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 ZNF451Q9Y4E5 1061 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 PCDHA3Q9Y5H8 950 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 ICE1Q9Y2F5 2266 aa14.08□□□□□ -0.16
SDC1-204ENST00000429035 SPTBN1Q01082 2364 aaKnown RBP14.07□□□□□ -0.16
SDC1-204ENST00000429035 TJP3O95049 919 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 RORAP35398 523 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 ITGA1P56199 1179 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 ATP1A4Q13733 1029 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 SYTL3Q4VX76 610 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 AMIGO1Q86WK6 493 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 GPR135Q8IZ08 494 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 CLDN19Q8N6F1 224 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 LRFN5Q96NI6 719 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 ALS2CR12Q96Q35 445 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 NLNQ9BYT8 704 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 OR52A5Q9H2C5 316 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 MVB12BQ9H7P6 319 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 SMARCAL1Q9NZC9 954 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 SERTAD3Q9UJW9 196 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms