RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TMEM9Q9P0T7 183 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 KLHL3Q9UH77 587 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 SHROOM3Q8TF72 1996 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 MYO10Q9HD67 2058 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 BCKDKO14874 412 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 GUCA1CO95843 209 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 WEE1P30291 646 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 BNIP2Q12982 314 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 RAPSNQ13702 412 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 ANGPTL8Q6UXH0 198 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 C16orf59Q7L2K0 433 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 TMEM151AQ8N4L1 468 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 BCL7CQ8WUZ0 217 aaPredicted RBP12.75□□□□□ -0.37
PTPRN-202ENST00000409251 SUSD3Q96L08 255 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 HOPXQ9BPY8 73 aaPredicted RBP12.75□□□□□ -0.37
PTPRN-202ENST00000409251 NUAK2Q9H093 628 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 SCN3BQ9NY72 215 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 POLG2Q9UHN1 485 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 SCN10AQ9Y5Y9 1956 aa12.75□□□□□ -0.37
PTPRN-202ENST00000409251 MOXD2PA6NHM9 499 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ARMC4Q5T2S8 1044 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF648Q5T619 568 aaPredicted RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 P3H2Q8IVL5 708 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 FAM217AQ8IXS0 508 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 COLGALT2Q8IYK4 626 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 LILRB4Q8NHJ6 448 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 HDAC2Q92769 488 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 HGH1Q9BTY7 390 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SMOC2Q9H3U7 446 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 INTS10Q9NVR2 710 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 VWA7Q9Y334 891 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF451Q9Y4E5 1061 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PCDHGA11Q9Y5H2 935 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 DNAH14Q0VDD8 3507 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SLC1A7O00341 560 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 CDK14O94921 469 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 MT-ND2P03891 347 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 GPIP06744 558 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 RBP1P09455 135 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 GJA1P17302 382 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 GPX3P22352 226 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SKIV2LQ15477 1246 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ALFQ53S48 1182 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PCID2Q5JVF3 399 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SULT1C3Q6IMI6 304 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 FUT10Q6P4F1 479 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 MRPL10Q7Z7H8 261 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF598Q86UK7 904 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 GALNT12Q8IXK2 581 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 S100ZQ8WXG8 99 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 CTRCQ99895 268 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 C11orf84Q9BUA3 381 aaPredicted RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 DSN1Q9H410 356 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 FAM118AQ9NWS6 357 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PAK1IP1Q9NWT1 392 aaPredicted RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SLC22A3O75751 556 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 CHRNB1P11230 501 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 AQP1P29972 269 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 GP2P55259 537 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 BPTFQ12830 3046 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PELI3Q8N2H9 469 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 DTWD1Q8N5C7 304 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 CHDHQ8NE62 594 aaPredicted RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PNPT1Q8TCS8 783 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 PCNPQ8WW12 178 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 LGALS12Q96DT0 336 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 Q96MT0 163 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SMAD5Q99717 465 aaKnown RBP12.74□□□□□ -0.37
PTPRN-202ENST00000409251 SLC39A8Q9C0K1 460 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF385DQ9H6B1 395 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ACTR8Q9H981 624 aa12.74□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF638Q14966 1978 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 H0YJX3 145 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 J3KR12 359 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF701M0R085 212 aaPredicted RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 M0R129 80 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 SEC14L2O76054 403 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 IFNA8P32881 189 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ALDH3A2P51648 485 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 OR2B6P58173 313 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 LRIT3Q3SXY7 679 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ZCCHC8Q6NZY4 707 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 MYEOVQ96EZ4 313 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 SMIM14Q96QK8 99 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 RUBCNLQ9H714 662 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 COMMD8Q9NX08 183 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 CD274Q9NZQ7 290 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 GMPPBQ9Y5P6 360 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 LOC100130705A0A1B0GUX0 176 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 FXYD1O00168 92 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 NPHS1O60500 1241 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 RHOBTB1O94844 696 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 DDX5P17844 614 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 POLR2JP52435 117 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 CASP9P55211 416 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 CDKN2DP55273 166 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 RAB25P57735 213 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 MXD1Q05195 221 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 GPNMBQ14956 572 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 FAM209AQ5JX71 171 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 239.8 ms