RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PDCD4Q53EL6 469 aaKnown RBP18.2■□□□□ 0.5
USP48-204ENST00000400301 PERM1Q5SV97 790 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ZDHHC21Q8IVQ6 265 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ISL2Q96A47 359 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 MTERF1Q99551 399 aaKnown RBP18.2■□□□□ 0.5
USP48-204ENST00000400301 PDE10AQ9Y233 779 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ZNF840PA6NDX5 716 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 FAM220BPB1ANY3 271 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 CCL16O15467 120 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 KRT20P35900 424 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 CREMQ03060 361 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 CRTC3Q6UUV7 619 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 SAPCD2Q86UD0 394 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 MINDY1Q8N5J2 469 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 EZH1Q92800 747 aaPredicted RBP18.2■□□□□ 0.5
USP48-204ENST00000400301 RTP3Q9BQQ7 232 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 C1QTNF1Q9BXJ1 281 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 SUV39H2Q9H5I1 410 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.2■□□□□ 0.5
USP48-204ENST00000400301 IFT80Q9P2H3 777 aaPredicted RBP18.2■□□□□ 0.5
USP48-204ENST00000400301 SSC5DA1L4H1 1573 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 GSTM1P09488 218 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 CDKN1CP49918 316 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 NEK2P51955 445 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 TUBB3Q13509 450 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 CCDC85BQ15834 202 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 HACD2Q6Y1H2 254 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 OR2AP1Q8NGE2 309 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 SLC45A3Q96JT2 553 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ARMC7Q9H6L4 198 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 INTS7Q9NVH2 962 aaKnown RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 OSER1Q9NX31 292 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 hCG_2039718K7EN88 272 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 SLC9A3R1O14745 358 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 STC2O76061 302 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 GLUD1P00367 558 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 PGRP06401 933 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 C8GP07360 202 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ENO2P09104 434 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 ANXA4P09525 319 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 EPORP19235 508 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 GRK3P35626 688 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 RGS21Q2M5E4 152 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 DCAF4L2Q8NA75 395 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 SLAIN1Q8ND83 568 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ARRDC2Q8TBH0 407 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 BORCS5Q969J3 196 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 FUBP1Q96AE4 644 aaKnown RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 CAPNS2Q96L46 248 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ZDHHC3Q9NYG2 299 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 RNF11Q9Y3C5 154 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 A0A1W2PRU2 124 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 PDZK1P1A8MUH7 402 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 PPP2R1BP30154 601 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 SOX6P35712 828 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 PTGR1Q14914 329 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ANXA8L1Q5VT79 327 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 TMEM106CQ9BVX2 250 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 KLHL25Q9H0H3 589 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 GJD2Q9UKL4 321 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 H3BM21 787 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ARSAP15289 507 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 HOXB6P17509 224 aaKnown RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 MAGEA12P43365 314 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 ZBED5Q49AG3 693 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 C3orf30Q96M34 536 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 NODALQ96S42 347 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 SOX17Q9H6I2 414 aaPredicted RBP18.19■□□□□ 0.5
USP48-204ENST00000400301 CORO2BQ9UQ03 480 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 DGKBQ9Y6T7 804 aa18.19■□□□□ 0.5
USP48-204ENST00000400301 LINC00854A0A1B0GVQ3 168 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 CARNS1A5YM72 827 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ERN1O75460 977 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 PPIBP23284 216 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 ALDH6A1Q02252 535 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 MYLK3Q32MK0 819 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ERI1Q8IV48 349 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 PHACTR4Q8IZ21 702 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 SVOPLQ8N434 492 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 PROX1Q92786 737 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 AP2M1Q96CW1 435 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 NLNQ9BYT8 704 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 MRPS23Q9Y3D9 190 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 GJB3O75712 270 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 RSL1D1O76021 490 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 TRAF3Q13114 568 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 TP53BP2Q13625 1128 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ERICH5Q6P6B1 374 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 CYP2U1Q7Z449 544 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 CCDC103Q8IW40 242 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 CMTM8Q8IZV2 173 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 OR4A15Q8NGL6 344 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 SLC32A1Q9H598 525 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 PLAC1Q9HBJ0 212 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ASF1AQ9Y294 204 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 A0A0U1RQS6 177 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ASLP04424 464 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 C8AP07357 584 aa18.18■□□□□ 0.5
USP48-204ENST00000400301 ANXA11P50995 505 aaKnown RBP18.18■□□□□ 0.5
USP48-204ENST00000400301 LDLRAP1Q5SW96 308 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms