RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CEP250Q9BV73 2442 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PLXNB3Q9ULL4 1909 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SPTY2D1-AS1A0A0U1RR47 76 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 A0A1B0GTW7 788 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SLC5A10A0PJK1 596 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 WDR91A4D1P6 747 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SLC16A5O15375 505 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 BIRC5O15392 142 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 KERAO60938 352 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 LILRB5O75023 590 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 GPC4O75487 556 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SLCO2B1O94956 709 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 WISP3O95389 354 aaPredicted RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 TOP3BO95985 862 aaKnown RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 PROCP04070 461 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 ENO2P09104 434 aaPredicted RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 PREPP48147 710 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SERPINB4P48594 390 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 PRKAA2P54646 552 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 DLG1Q12959 904 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 NFE2L1Q14494 772 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 TSNQ15631 228 aaKnown RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 TECRLQ5HYJ1 363 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 ATG16L1Q676U5 607 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 UBE2R2Q712K3 238 aaPredicted RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 ZNF547Q8IVP9 402 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SLC22A15Q8IZD6 547 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 LRRC8CQ8TDW0 803 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 OR1E3Q8WZA6 343 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 PDXPQ96GD0 296 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 SCARF2Q96GP6 870 aaPredicted RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 EGFL8Q99944 293 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 CAPS2Q9BXY5 557 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 TRNAU1APQ9NX07 287 aaKnown RBP13.91□□□□□ -0.18
SKA1-202ENST00000398452 DNAJC28Q9NX36 388 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 CD274Q9NZQ7 290 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 DOLKQ9UPQ8 538 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 PCDHGA2Q9Y5H1 932 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 DGKBQ9Y6T7 804 aa13.91□□□□□ -0.18
SKA1-202ENST00000398452 KDM1AO60341 852 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 H2AFYO75367 372 aaKnown RBP13.9□□□□□ -0.18
SKA1-202ENST00000398452 SLC2A4P14672 509 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ATP5F1P24539 256 aaPredicted RBP13.9□□□□□ -0.18
SKA1-202ENST00000398452 GMPRP36959 345 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 MDH1P40925 334 aaKnown RBP13.9□□□□□ -0.18
SKA1-202ENST00000398452 ACTR1BP42025 376 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 HK3P52790 923 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ACTR1AP61163 376 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 DMPKQ09013 629 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ABRQ12979 859 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 SRSF5Q13243 272 aaKnown RBP13.9□□□□□ -0.18
SKA1-202ENST00000398452 ALG11Q2TAA5 492 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 PLK5Q496M5 336 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ZYG11AQ6WRX3 759 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ISCA2Q86U28 154 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 PHACTR4Q8IZ21 702 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 FBXO39Q8N4B4 442 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 RAB42Q8N4Z0 105 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 DENND1AQ8TEH3 1009 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ORAI3Q9BRQ5 295 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 C12orf65Q9H3J6 166 aaKnown RBP13.9□□□□□ -0.18
SKA1-202ENST00000398452 NUDT4Q9NZJ9 180 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 COPG2Q9UBF2 871 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 KCNK6Q9Y257 313 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 PCDHGA10Q9Y5H3 936 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 ZNF292O60281 2723 aa13.9□□□□□ -0.18
SKA1-202ENST00000398452 CDC7O00311 574 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 VILLO15195 856 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 TSPAN12O95859 305 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 BPGMP07738 259 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 ANXA5P08758 320 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 JUNDP17535 347 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 ITPKAP23677 461 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 CLCNKAP51800 687 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 CAMK2BQ13554 666 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 MPP2Q14168 576 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 GBX1Q14549 363 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 CFAP157Q5JU67 520 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 METRNLQ641Q3 311 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 UNC5DQ6UXZ4 953 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 TAF8Q7Z7C8 310 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 C11orf96Q7Z7L8 435 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 SLC22A18ASQ8N1D0 253 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 ZBTB44Q8NCP5 570 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 PPP4R1Q8TF05 950 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 PIGKQ92643 395 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 GPR78Q96P69 363 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 PARVBQ9HBI1 364 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 UTP6Q9NYH9 597 aaKnown RBP13.89□□□□□ -0.19
SKA1-202ENST00000398452 SPASTQ9UBP0 616 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 APOBEC3BQ9UH17 382 aaKnown RBP13.89□□□□□ -0.19
SKA1-202ENST00000398452 ASF1AQ9Y294 204 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 OARD1Q9Y530 152 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 SPTBN2O15020 2390 aa13.89□□□□□ -0.19
SKA1-202ENST00000398452 PLXND1Q9Y4D7 1925 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 A0A1W2PR77 199 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 NCF1BA6NI72 391 aaPredicted RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 NCF1CA8MVU1 366 aaPredicted RBP13.88□□□□□ -0.19
SKA1-202ENST00000398452 SCAMP1O15126 338 aa13.88□□□□□ -0.19
SKA1-202ENST00000398452 TRIM13O60858 407 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms