RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CCR10P46092 362 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 PWWP2BQ6NUJ5 590 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 PHC3Q8NDX5 983 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 TFGQ92734 400 aaPredicted RBP21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 PPM1MQ96MI6 270 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 POMT2Q9UKY4 750 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 PADI1Q9ULC6 663 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 BTRCQ9Y297 605 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 MRPS18BQ9Y676 258 aaKnown RBP21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 J3QKU1 62 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 GOT2P00505 430 aaKnown RBP21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 FTH1P02794 183 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 APRTP07741 180 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 CCNYL3P0C7X3 344 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 ZSCAN5DPP0CG00 497 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 RPL22P35268 128 aaKnown RBP21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 POLE2P56282 527 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TUBB4BP68371 445 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TUBB2AQ13885 445 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 BOP1Q14137 746 aaKnown RBP21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TMTC4Q5T4D3 741 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 LYPLAL1Q5VWZ2 237 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 FBXO38Q6PIJ6 1188 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 AFTPHQ6ULP2 937 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 NLRP9Q7RTR0 991 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 OR52E1Q8NGJ3 308 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 PEX13Q92968 403 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 ZNF778Q96MU6 729 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TUBB2BQ9BVA1 445 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TLR10Q9BXR5 811 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 LHX9Q9NQ69 397 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 C1GALT1Q9NS00 363 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 ZKSCAN5Q9Y2L8 839 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 TCAF1Q9Y4C2 921 aa21.09■□□□□ 0.97
CCDC28B-201ENST00000373602 HELZ2Q9BYK8 2649 aaKnown RBP21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 BTN3A3O00478 584 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 CCZ1BP86790 482 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 CCZ1P86791 482 aaPredicted RBP21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 ZNF534Q76KX8 674 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 TRIM58Q8NG06 486 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 OR4L1Q8NH43 312 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 OR8K5Q8NH50 307 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 MAIP1Q8WWC4 291 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 ELMO1Q92556 727 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 ZNF501Q96CX3 271 aaPredicted RBP21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 SGSM3Q96HU1 749 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 TTC1Q99614 292 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 NRTNQ99748 197 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 FAM117AQ9C073 453 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 SLC25A18Q9H1K4 315 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 EIF2B3Q9NR50 452 aaKnown RBP21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 TUBD1Q9UJT1 453 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 KCND3Q9UK17 655 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 PCDHGA6Q9Y5G7 932 aa21.08■□□□□ 0.97
CCDC28B-201ENST00000373602 GCN1Q92616 2671 aaKnown RBP21.08■□□□□ 0.96
CCDC28B-201ENST00000373602 GSAPA4D1B5 854 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 SLC9B1P1A6NJY1 282 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 BTN3A1O00481 513 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 SLC28A2O43868 658 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 OR1I1O60431 355 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 FGGP02679 453 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 OR56A5P0C7T3 313 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 CDH3P22223 829 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 ACADLP28330 430 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 PRDX3P30048 256 aaKnown RBP21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 KCNAB2Q13303 367 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 GPR19Q15760 415 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 C16orf46Q6P387 395 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 C4orf22Q6V702 233 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 HGH1Q9BTY7 390 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 KCND1Q9NSA2 647 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 SOHLH2Q9NX45 425 aa21.07■□□□□ 0.96
CCDC28B-201ENST00000373602 SLC5A10A0PJK1 596 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 NTRK1P04629 796 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 PLOD1Q02809 727 aaPredicted RBP21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 PRKG2Q13237 762 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 DNASE1L3Q13609 305 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 DEFB109BQ30KR1 87 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 ATP1A1-AS1Q5TC04 95 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 AMIGO1Q86WK6 493 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 ADGRF3Q8IZF5 1079 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 PPHLN1Q8NEY8 458 aaKnown RBP21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 OR6P1Q8NGX9 317 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 CT55Q8WUE5 264 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 PITPNM3Q9BZ71 974 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 LATS2Q9NRM7 1088 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 PCDHB3Q9Y5E6 796 aa21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 HEMK1Q9Y5R4 338 aaPredicted RBP21.06■□□□□ 0.96
CCDC28B-201ENST00000373602 C21orf140B9A014 251 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 F8W8V4 182 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 KATNA1O75449 491 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 PRAMEP78395 509 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 SEMA3AQ14563 771 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 BRD3Q15059 726 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 FASTKD1Q53R41 847 aaKnown RBP21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 PCID2Q5JVF3 399 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 OR5AR1Q8NGP9 310 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 APOBEC4Q8WW27 367 aaKnown RBP21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 XKR8Q9H6D3 395 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms