RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 GIN1Q9NXP7 522 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 RNF181Q9P0P0 153 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 TMEFF2Q9UIK5 374 aaPredicted RBP16.1■□□□□ 0.17
SDC4-201ENST00000372733 C3orf18Q9UK00 162 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 COMMD10Q9Y6G5 202 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 ELOVL7A1L3X0 281 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 FFAR3O14843 346 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 BCKDKO14874 412 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 GPR42O15529 346 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 FMO3P31513 532 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 TOP3AQ13472 1001 aaPredicted RBP16.1■□□□□ 0.17
SDC4-201ENST00000372733 RAPSNQ13702 412 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 LAPTM4AQ15012 233 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 TAF1AQ15573 450 aaPredicted RBP16.1■□□□□ 0.17
SDC4-201ENST00000372733 SPANXN4Q5MJ08 99 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 TMEM236Q5W0B7 351 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 GDF6Q6KF10 455 aaPredicted RBP16.1■□□□□ 0.17
SDC4-201ENST00000372733 GALNT5Q7Z7M9 940 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 EID3Q8N140 333 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 MFSD4AQ8N468 514 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 AADATQ8N5Z0 425 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 MCOLN3Q8TDD5 553 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 MGME1Q9BQP7 344 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 SACM1LQ9NTJ5 587 aa16.1■□□□□ 0.17
SDC4-201ENST00000372733 TDRD15B5MCY1 1934 aaKnown RBP16.1■□□□□ 0.17
SDC4-201ENST00000372733 NADKO95544 446 aaPredicted RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 BMP4P12644 408 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 YBEYP58557 167 aaPredicted RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 PON2Q15165 354 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 FAM110CQ1W6H9 321 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 C10orf111Q8N326 155 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 KRTCAP2Q8N6L1 136 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 ZFP14Q9HCL3 533 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 SLC6A13Q9NSD5 602 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 VNN3Q9NY84 501 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 NUDT4Q9NZJ9 180 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 ERVK-18Q9QC07 812 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 PADI3Q9ULW8 664 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 CNOT3O75175 753 aaKnown RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 PRLP01236 227 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 FTH1P02794 183 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 CYP4B1P13584 511 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 VBP1P61758 197 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 HMGCS1Q01581 520 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 TRAF3Q13114 568 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 CDK5R2Q13319 367 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 GTF2H2Q13888 395 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 MAPKAPK3Q16644 382 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 ALG1LQ6GMV1 187 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 GTF2H2CQ6P1K8 395 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 GCNT7Q6ZNI0 430 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 DCP2Q8IU60 420 aaKnown RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 OR5K1Q8NHB7 308 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 CLHC1Q8NHS4 586 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 GLMNQ92990 594 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 CCDC97Q96F63 343 aaPredicted RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 ZNF641Q96N77 438 aaPredicted RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 ZBTB18Q99592 522 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 RHNO1Q9BSD3 238 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 SPON2Q9BUD6 331 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 HERC2P3Q9BVR0 1158 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 INTS6Q9UL03 887 aaKnown RBP16.09■□□□□ 0.17
SDC4-201ENST00000372733 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 PMF1-BGLAPU3KQ54 211 aa16.09■□□□□ 0.17
SDC4-201ENST00000372733 HTR3EA5X5Y0 456 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 C2orf81A6NN90 581 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 ARVCFO00192 962 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 ANGPTL1O95841 491 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 TYMPP19971 482 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 AKT1P31749 480 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 HOXD12P35452 270 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 VAC14Q08AM6 782 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 CCDC81Q6ZN84 652 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 DET1Q7L5Y6 550 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 ADHFE1Q8IWW8 467 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 LGI2Q8N0V4 545 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 FBXO32Q969P5 355 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 SGIP1Q9BQI5 828 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 CINPQ9BW66 212 aaPredicted RBP16.08■□□□□ 0.17
SDC4-201ENST00000372733 FBXO44Q9H4M3 255 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 MAGEE1Q9HCI5 957 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 FARSBQ9NSD9 589 aaKnown RBP16.08■□□□□ 0.17
SDC4-201ENST00000372733 CCL27Q9Y4X3 112 aa16.08■□□□□ 0.17
SDC4-201ENST00000372733 M0R3G1 203 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 IFRD1O00458 451 aaPredicted RBP16.08■□□□□ 0.16
SDC4-201ENST00000372733 KDM1AO60341 852 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 SERPINA1P01009 418 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 MSH3P20585 1137 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 HSPA7P48741 367 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 MAPKAPK2P49137 400 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 TTPAP49638 278 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 DGCR6Q14129 220 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 MAPK11Q15759 364 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 INAQ16352 499 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 PGS1Q32NB8 556 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 LAIR1Q6GTX8 287 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 TMEM53Q6P2H8 277 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 DSG4Q86SJ6 1040 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 MICU2Q8IYU8 434 aa16.08■□□□□ 0.16
SDC4-201ENST00000372733 ZCCHC7Q8N3Z6 543 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms