RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZDBF2Q9HCK1 2354 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 LINC01553A4QN01 128 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 OR6C74A6NCV1 312 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 UPK3BL1B0FP48 263 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 UPK3BL2E5RIL1 263 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CCDC188H7C350 402 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 EI24O14681 340 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 AIM2O14862 343 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 AQP9O43315 295 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MTRF1O75570 445 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 CYP11A1P05108 521 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DCNP07585 359 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 GP1BBP13224 206 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ZNF37AP17032 561 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 IL10P22301 178 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CXCR1P25024 350 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ARNTP27540 789 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CDC25BP30305 580 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TTKP33981 857 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RAD23BP54727 409 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RPS15AP62244 130 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 PSPHP78330 225 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RUNX1T1Q06455 604 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 VAC14Q08AM6 782 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RTP2Q5QGT7 225 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 FAM182AQ5T1J6 154 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 FAM91A1Q658Y4 838 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RGS9BPQ6ZS82 235 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 C1orf186Q6ZWK4 172 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ARFGAP1Q8N6T3 406 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 IL17RCQ8NAC3 791 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ST13P5Q8NFI4 369 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 CMASQ8NFW8 434 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 OR4F15Q8NGB8 312 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CPT1CQ8TCG5 803 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TRAPPC12Q8WVT3 735 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TOP1MTQ969P6 601 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ZNF669Q96BR6 464 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 C19orf60Q96EN9 201 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 WRAP53Q9BUR4 548 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 CEP44Q9C0F1 390 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 EPB41L4BQ9H329 900 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CAMK2AQ9UQM7 478 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 A0A1W2PP18 115 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 HAS3O00219 553 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 HAT1O14929 419 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RTN2O75298 545 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DBHP09172 617 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 EPXP11678 715 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ATP1A3P13637 1013 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SSTR2P30874 369 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MMP15P51511 669 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CHN2P52757 468 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ABATP80404 500 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CFHR1Q03591 330 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GALNT3Q14435 633 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ECM1Q16610 540 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DCAF12L1Q5VU92 463 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 YOD1Q5VVQ6 348 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 CWF19L1Q69YN2 538 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 SERINC5Q86VE9 423 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RETREG3Q86VR2 466 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 NLGN4XQ8N0W4 816 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ANKRD52Q8NB46 1076 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 NLGN4YQ8NFZ3 816 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 OR5L1Q8NGL2 311 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 OR9A2Q8NGT5 310 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 KLK6Q92876 244 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 BORCS8Q96FH0 119 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DCLRE1CQ96SD1 692 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 ZNF607Q96SK3 696 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SGIP1Q9BQI5 828 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TRIM2Q9C040 744 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PIH1D1Q9NWS0 290 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 KLHL20Q9Y2M5 609 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MAP4K5Q9Y4K4 846 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PCDHGB2Q9Y5G2 931 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MED1Q15648 1581 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 GLYATL1P3A0A0U1RQE8 302 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 IQCMA0A1B0GVH7 501 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 hCG_1807616A0A1W2PRN6 198 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 NKX6-3A6NJ46 265 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 LEFTY2O00292 366 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SMPD2O60906 423 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ZMPSTE24O75844 475 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 BCAS2O75934 225 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 RENP00797 406 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 OPN1SWP03999 348 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RPLP0P05388 317 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 RPSAP08865 295 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 HOXD4P09016 255 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 ETS1P14921 441 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SLC6A4P31645 630 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 EIF2DP41214 584 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 RPS6KA3P51812 740 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RPS16P62249 146 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 MYBPC1Q00872 1141 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PWP1Q13610 501 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 VEZF1Q14119 521 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 INPP5AQ14642 412 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms