RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 DNMT3LQ9UJW3 386 aa8.57□□□□□ -1.04
RTN3-202ENST00000339997 CDC14AQ9UNH5 594 aa8.57□□□□□ -1.04
RTN3-202ENST00000339997 SNX7Q9UNH6 387 aa8.57□□□□□ -1.04
RTN3-202ENST00000339997 ZNF451Q9Y4E5 1061 aa8.57□□□□□ -1.04
RTN3-202ENST00000339997 HSPB11Q9Y547 144 aa8.57□□□□□ -1.04
RTN3-202ENST00000339997 SPIN1Q9Y657 262 aaPredicted RBP8.57□□□□□ -1.04
RTN3-202ENST00000339997 STX16O14662 325 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 OR10H2O60403 315 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SERPINB7O75635 380 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CCNDBP1O95273 360 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SNAP29O95721 258 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 GLUD1P00367 558 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SLC7A1P30825 629 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 HOXD13P35453 343 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 DIO3P55073 304 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 POLR2LP62875 67 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 SLC13A2Q13183 592 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 PPIL2Q13356 520 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 ACAP2Q15057 778 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 HMGN2P46Q86SG4 172 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 PDSS2Q86YH6 399 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 TMEM86AQ8N2M4 240 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CADM2Q8N3J6 435 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 AADATQ8N5Z0 425 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SLC13A3Q8WWT9 602 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RFT1Q96AA3 541 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SLC39A8Q9C0K1 460 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 GBA3Q9H227 469 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 ATP13A3Q9H7F0 1226 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RIMKLBQ9ULI2 386 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 VCANP13611 3396 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CACNA1CQ13936 2221 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CITO14578 2027 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 LOC100509620A0A075B734 347 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 B4GALT4O60513 344 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 XYLBO75191 536 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RPP40O75818 363 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 GPIP06744 558 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 ZNF12P17014 697 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RPL10P27635 214 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 GPD2P43304 727 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 GSK3BP49841 420 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 HSF2Q03933 536 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CSTF1Q05048 431 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 GTF2H2Q13888 395 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 GTF2H2CQ6P1K8 395 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SERPINA13PQ6UXR4 307 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RBFAQ8N0V3 343 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 OR10H4Q8NGA5 316 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 HM13Q8TCT9 377 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 AP3S1Q92572 193 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 TMIGD2Q96BF3 282 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 SLC7A6OSQ96CW6 309 aaPredicted RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 LRRC58Q96CX6 371 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 MUS81Q96NY9 551 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 WRAP53Q9BUR4 548 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 FAM105AQ9NUU6 356 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 PSME2Q9UL46 239 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 BBIP1A8MTZ0 92 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 NARSO43776 548 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 GCATO75600 419 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 TOXO94900 526 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 CPN2P22792 545 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 PDHA2P29803 388 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 MNDAP41218 407 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 HNMTP50135 292 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 ARHGDIBP52566 201 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 AP1S1P61966 158 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 OLR1P78380 273 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 TGM3Q08188 693 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 MYLK3Q32MK0 819 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 TCEAL5Q5H9L2 206 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 RBM23Q86U06 439 aaKnown RBP8.56□□□□□ -1.04
RTN3-202ENST00000339997 CCDC115Q96NT0 180 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 ZNF541Q9H0D2 1346 aa8.56□□□□□ -1.04
RTN3-202ENST00000339997 FADS2P1A8MWK0 482 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZNF879B4DU55 563 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 MEN1O00255 615 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CDC7O00311 574 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 SNRPD1P62314 119 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 TARDBPQ13148 414 aaKnown RBP eCLIP8.55□□□□□ -1.04
RTN3-202ENST00000339997 FBXO42Q6P3S6 717 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 IQCHQ86VS3 1027 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CHST4Q8NCG5 386 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 ZFP28Q8NHY6 868 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 STON2Q8WXE9 905 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 OXSMQ9NWU1 459 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 BAIAP2Q9UQB8 552 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 RBM7Q9Y580 266 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 KNTC1P50748 2209 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 C2orf92A0A1B0GVN3 265 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 A8MT66 165 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 PDPK1O15530 556 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 IFNW1P05000 195 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 PGRP06401 933 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 CYP3A5P20815 502 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 L1CAMP32004 1257 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 BCAP31P51572 246 aa8.55□□□□□ -1.04
RTN3-202ENST00000339997 RPS24P62847 133 aaKnown RBP8.55□□□□□ -1.04
RTN3-202ENST00000339997 SLC10A7Q0GE19 358 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms