RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 K7EPI3 171 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 SOX9P48436 509 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CACNA2D1P54289 1103 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 VAC14Q08AM6 782 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 SEMA3AQ14563 771 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 TSNQ15631 228 aaKnown RBP9.98□□□□□ -0.81
USP54-201ENST00000339859 OR9A1PQ8NGU1 263 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CENPTQ96BT3 561 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 CCDC90BQ9GZT6 254 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 KLHL20Q9Y2M5 609 aa9.98□□□□□ -0.81
USP54-201ENST00000339859 IQCF5A8MTL0 148 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MATN2O00339 956 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 YKT6O15498 198 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 BPGMP07738 259 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MPC1LP0DKB6 136 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 HRH2P25021 359 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 TNK2Q07912 1038 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 TRABD2AQ86V40 505 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 TMEM173Q86WV6 379 aaPredicted RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 ST13P4Q8IZP2 240 aaPredicted RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 SCAIQ8N9R8 606 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 TMEM145Q8NBT3 493 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 LINC01599Q8WXQ3 324 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 ART5Q96L15 291 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 NSMCE2Q96MF7 247 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 POPDC3Q9HBV1 291 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 COPG2Q9UBF2 871 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 PCDHB3Q9Y5E6 796 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SLC16A5O15375 505 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 NIPSNAP2O75323 286 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 TGDSO95455 350 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 GLULP15104 373 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 GLDCP23378 1020 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 RPL10P27635 214 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 TMEM259Q4ZIN3 620 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 WLSQ5T9L3 541 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 ARHGAP40Q5TG30 622 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MBOAT1Q6ZNC8 495 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 DPPA4Q7L190 304 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 B4GALNT2Q8NHY0 566 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 HDAC3O15379 428 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 UMPSP11172 480 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 EIF2DP41214 584 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 STC1P52823 247 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SLC16A1P53985 500 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 NUP107P57740 925 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 C2orf80Q0P641 193 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 C7orf57Q8NEG2 295 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 ZMIZ2Q8NF64 920 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 ZNF607Q96SK3 696 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 AK5Q9Y6K8 562 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 K7ERQ8 282 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 DNAJB1P25685 340 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MAPK10P53779 464 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 HTRA4P83105 476 aaPredicted RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 CYP4F3Q08477 520 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 OASLQ15646 514 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 LPAL2Q16609 132 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 ZC3H7AQ8IWR0 971 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 GJD3Q8N144 294 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 CEP76Q8TAP6 659 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 CKAP2Q8WWK9 683 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 CEP19Q96LK0 163 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 DMTF1Q9Y222 760 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 PCDHGA4Q9Y5G9 962 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 DYTNA2CJ06 578 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SNRPB2P08579 225 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 IL12BP29460 328 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SLC14A2Q15849 920 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SCIMPQ6UWF3 145 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 DNAJC14Q6Y2X3 702 aaPredicted RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 RHBDD1Q8TEB9 315 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 POP5Q969H6 163 aaKnown RBP9.97□□□□□ -0.81
USP54-201ENST00000339859 MRGPRX2Q96LB1 330 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 PLEKHG4BQ96PX9 1271 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MGME1Q9BQP7 344 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 MCMBPQ9BTE3 642 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 PRRG4Q9BZD6 226 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 SCOCQ9UIL1 159 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 BLOC1S6Q9UL45 172 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 PRKAB1Q9Y478 270 aa9.97□□□□□ -0.81
USP54-201ENST00000339859 UBXN8O00124 270 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 DNAJC8O75937 253 aaPredicted RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 PSMA3P25788 255 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 RPS7P62081 194 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 TBL3Q12788 808 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 FASTKD3Q14CZ7 662 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 HEPACAMQ14CZ8 416 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 RFTN2Q52LD8 501 aaPredicted RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 TDRPQ86YL5 185 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 TSACCQ96A04 125 aaPredicted RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 C19orf60Q96EN9 201 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SSU72Q9NP77 194 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 FZD3Q9NPG1 666 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 KRT84Q9NSB2 600 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 TAC3Q9UHF0 121 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 RPS6KA6Q9UK32 745 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 NPHS1O60500 1241 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SERPINB7O75635 380 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 ANXA4P09525 319 aaPredicted RBP9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms