RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NRTNQ99748 197 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 TLR10Q9BXR5 811 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 ZNF71Q9NQZ8 489 aaPredicted RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 TUBD1Q9UJT1 453 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 PRSS21Q9Y6M0 314 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 CCDC162PA2VCL2 907 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 SLC9B1P1A6NJY1 282 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 ERI2A8K979 691 aaKnown RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 MATN2O00339 956 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 BTN3A1O00481 513 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 SUV39H1O43463 412 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 CPNE3O75131 537 aaKnown RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 SCRG1O75711 98 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 AP2A2O94973 939 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 CD151P48509 253 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 PRKG2Q13237 762 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 ITIH4Q14624 930 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 ZNF658BQ4V348 819 aaPredicted RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 CRTC2Q53ET0 693 aaPredicted RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 CARFQ8N187 725 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 CCDC89Q8N998 374 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 ELMO1Q92556 727 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 ZNF501Q96CX3 271 aaPredicted RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 FCRL4Q96PJ5 515 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 FRMD8P1Q9BZ68 369 aaPredicted RBP18.97■□□□□ 0.63
LIME1-201ENST00000309546 TWSG1Q9GZX9 223 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 XKR8Q9H6D3 395 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 MVB12BQ9H7P6 319 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 FANCEQ9HB96 536 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 RAB6BQ9NRW1 208 aa18.97■□□□□ 0.63
LIME1-201ENST00000309546 SPTA1P02549 2419 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 TLN1Q9Y490 2541 aaKnown RBP18.96■□□□□ 0.63
LIME1-201ENST00000309546 PIPSLA2A3N6 862 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 HEATR9A2RTY3 570 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 BTN3A3O00478 584 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 CREG1O75629 220 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 WISP1O95388 367 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 FTH1P02794 183 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 FURINP09958 794 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 ETS1P14921 441 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 FOXN2P32314 431 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 GRIA1P42261 906 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 GSDMDP57764 484 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 RPA4Q13156 261 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 BOP1Q14137 746 aaKnown RBP18.96■□□□□ 0.63
LIME1-201ENST00000309546 RPS6KA1Q15418 735 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 SYTL3Q4VX76 610 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 FAM199XQ6PEV8 388 aaPredicted RBP18.96■□□□□ 0.63
LIME1-201ENST00000309546 NAPRTQ6XQN6 538 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 TMEM135Q86UB9 458 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 OR13J1Q8NGT2 312 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 TFGQ92734 400 aaPredicted RBP18.96■□□□□ 0.63
LIME1-201ENST00000309546 RUFY1Q96T51 708 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 KLHL25Q9H0H3 589 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 ACTL8Q9H568 366 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 CLMPQ9H6B4 373 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 C1GALT1Q9NS00 363 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 KCND1Q9NSA2 647 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 SLC2A6Q9UGQ3 507 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 POLHQ9Y253 713 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 BTRCQ9Y297 605 aa18.96■□□□□ 0.63
LIME1-201ENST00000309546 C21orf140B9A014 251 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 LIN7AO14910 233 aaPredicted RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 GOT2P00505 430 aaKnown RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 GSTM1P09488 218 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 PRDX3P30048 256 aaKnown RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 RPS18P62269 152 aaKnown RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 GSTM4Q03013 218 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 KCNC4Q03721 635 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 TSTD2Q5T7W7 516 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 AFTPHQ6ULP2 937 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 AMIGO1Q86WK6 493 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 OR8K5Q8NH50 307 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 MR1Q95460 341 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 HDAC10Q969S8 669 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 ABHD17AQ96GS6 310 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 TFB2MQ9H5Q4 396 aaKnown RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 AKIRIN1Q9H9L7 192 aaPredicted RBP18.95■□□□□ 0.62
LIME1-201ENST00000309546 PCDHGA6Q9Y5G7 932 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 KCNMB2Q9Y691 235 aa18.95■□□□□ 0.62
LIME1-201ENST00000309546 SPTBP11277 2137 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 QSOX1O00391 747 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 SUN1O94901 812 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 APRTP07741 180 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 PVRP15151 417 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 ST6GAL1P15907 406 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 PSMA3P25788 255 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 CSE1LP55060 971 aaKnown RBP18.94■□□□□ 0.62
LIME1-201ENST00000309546 GPS2Q13227 327 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 LAMB3Q13751 1172 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 MEI1Q5TIA1 1274 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 PRAMEF17Q5VTA0 474 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 PACS1Q6VY07 963 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 GLIS1Q8NBF1 620 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 OR5AR1Q8NGP9 310 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 OR6P1Q8NGX9 317 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 TTC1Q99614 292 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 LZTFL1Q9NQ48 299 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 ACTR10Q9NZ32 417 aa18.94■□□□□ 0.62
LIME1-201ENST00000309546 ASF1AQ9Y294 204 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms