RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 XKR5Q6UX68 686 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 TMEM26Q6ZUK4 368 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 UBLCP1Q8WVY7 318 aaPredicted RBP17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 ELMO2Q96JJ3 720 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 NDNQ99608 321 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 RRAGDQ9NQL2 400 aaPredicted RBP17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 IMP3Q9NV31 184 aaKnown RBP17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 ZNF624Q9P2J8 865 aaPredicted RBP17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 SLC17A6Q9P2U8 582 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 SLC24A2Q9UI40 661 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 ASF1AQ9Y294 204 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 MED16Q9Y2X0 877 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 RNF215Q9Y6U7 377 aa17.48■□□□□ 0.39
SSSCA1-201ENST00000309328 OR52A4PA6NMU1 304 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 DKK1O94907 266 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 ITGA2BP08514 1039 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 STMN1P16949 149 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 PDHA2P29803 388 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 IL2P60568 153 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 SIM1P81133 766 aaPredicted RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 SLC29A2Q14542 456 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 BRD3Q15059 726 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 RBM20Q5T481 1227 aaKnown RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 GUSBP11Q6P575 273 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 DCUN1D3Q8IWE4 304 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 MREGQ8N565 214 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 NKAPQ8N5F7 415 aaKnown RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 LILRA3Q8N6C8 439 aaPredicted RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 SIDT2Q8NBJ9 832 aaKnown RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 ACVR1CQ8NER5 493 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 OR10G6Q8NH81 332 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 OR5K2Q8NHB8 316 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 SKA2Q8WVK7 121 aaPredicted RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 ANKRD7Q92527 254 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 CCDC74AQ96AQ1 378 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 INSM2Q96T92 566 aaPredicted RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 PAFAH2Q99487 392 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 ABCG4Q9H172 646 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 KIR3DX1Q9H7L2 352 aa17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 SCHIP1Q9P0W5 487 aaPredicted RBP17.47■□□□□ 0.39
SSSCA1-201ENST00000309328 ARID1BQ8NFD5 2236 aaPredicted RBP17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 CCDC151A5D8V7 595 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 FAM221BA6H8Z2 402 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 TCEA3O75764 348 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 KRT37O76014 449 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 CRABP2P29373 138 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SLC26A3P40879 764 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 CDKN2DP55273 166 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 DNAJC3Q13217 504 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SP140Q13342 867 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SQSTM1Q13501 440 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 USP10Q14694 798 aaKnown RBP17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SPRED1Q7Z699 444 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 MYO1HQ8N1T3 1032 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 RAB42Q8N4Z0 105 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SPDYE1Q8NFV5 336 aaPredicted RBP17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 PATE1Q8WXA2 126 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 MTBPQ96DY7 904 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 ATXN7L3BQ96GX2 97 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 PDLIM5Q96HC4 596 aaKnown RBP17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 CCDC3Q9BQI4 270 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 RAB11FIP5Q9BXF6 653 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 KCNK4Q9NYG8 393 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 SLC39A10Q9ULF5 831 aa17.46■□□□□ 0.39
SSSCA1-201ENST00000309328 TDRD6O60522 2096 aaKnown RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 CCDC189A1A4V9 331 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 PPM1DO15297 605 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 DUX1O43812 170 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 MATN4O95460 622 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 CATP04040 527 aaKnown RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 C8GP07360 202 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 FTH1P19P0C7X4 201 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 ZNF37AP17032 561 aaPredicted RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 ID4P47928 161 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 RAB10P61026 200 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 RASA2Q15283 850 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 UAP1Q16222 522 aaPredicted RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 ACSBG2Q5FVE4 666 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 CACTIN-AS1Q8N1I8 211 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 GIMAP7Q8NHV1 300 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 GRAMD1AQ96CP6 724 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 AHCYL2Q96HN2 611 aaKnown RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 FERD3LQ96RJ6 166 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 TFB2MQ9H5Q4 396 aaKnown RBP17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 GPAMQ9HCL2 828 aa17.45■□□□□ 0.38
SSSCA1-201ENST00000309328 TRBV23OR9-2A0A075B6M9 112 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 IQANK1A0A1B0GTG1 560 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 PABPN1LA6NDY0 278 aaKnown RBP17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 POC1B-GALNT4F8VUJ3 575 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 MATN2O00339 956 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 SLC16A5O15375 505 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 NUDT17P0C025 328 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 HSD17B3P37058 310 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 HSD17B2P37059 387 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 SERPINB8P50452 374 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 TAS2R39P59534 338 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 GPR18Q14330 331 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 EFTUD2Q15029 972 aaKnown RBP eCLIP17.44■□□□□ 0.383e-6■■■■■ 34.6
SSSCA1-201ENST00000309328 PLCL1Q15111 1095 aa17.44■□□□□ 0.38
SSSCA1-201ENST00000309328 ZKSCAN8Q15776 578 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms