RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CLIP4Q8N3C7 705 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 XAGE5Q8WWM1 108 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SUSD6Q92537 303 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 BORCS6Q96GS4 357 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 AIF1LQ9BQI0 150 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF696Q9H7X3 374 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 MAP10Q9P2G4 905 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 RUVBL1Q9Y265 456 aaKnown RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 A0A1W2PP18 115 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CARNS1A5YM72 827 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SLC9A3R1O14745 358 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 LMO2P25791 158 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CD52P31358 61 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CDH4P55283 916 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 RGS1Q08116 209 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ZBTB6Q15916 424 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SYT16Q17RD7 645 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SERPINA9Q86WD7 417 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 DENND1AQ8TEH3 1009 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 AP2M1Q96CW1 435 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 FBXL20Q96IG2 436 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 BIRC8Q96P09 236 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 TUBA1CQ9BQE3 449 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CLEC4AQ9UMR7 237 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF510Q9Y2H8 683 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 PCDHGB3Q9Y5G1 929 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 DENRO43583 198 aaKnown RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 GRIN3BO60391 1043 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 REM1O75628 298 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 NPPAP01160 153 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 AHSGP02765 367 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SLC35G1Q2M3R5 365 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SOWAHAQ2M3V2 549 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 OR6K2Q8NGY2 324 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 PSMG2Q969U7 264 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ESAMQ96AP7 390 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 HAPLN3Q96S86 360 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 TXLNGYQ9BZA5 131 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 POLR2J2Q9GZM3 115 aaKnown RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 DSN1Q9H410 356 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 FKBPLQ9UIM3 349 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 MKLN1Q9UL63 735 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 YJEFN3A6XGL0 299 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 ATG13O75143 517 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 NME6O75414 186 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PSKH1P11801 424 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 ATF6P18850 670 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 SLC15A1P46059 708 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 NAE1Q13564 534 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 DUSP28Q4G0W2 176 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 BIRC7Q96CA5 298 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 FTHL17Q9BXU8 183 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 TCAF2A6NFQ2 919 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 H0YJX3 145 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 STX16O14662 325 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 XYLBO75191 536 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 C1RP00736 705 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 C8GP07360 202 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 MMP3P08254 477 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 SSR2P43308 183 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 C9orf64Q5T6V5 341 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 UBE2J2Q8N2K1 259 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 OR10G2Q8NGC3 310 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 ERMAPQ96PL5 475 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 C1QTNF1Q9BXJ1 281 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 EBPLQ9BY08 206 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 ATG10Q9H0Y0 220 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 E7ESA3 106 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 DDNO94850 711 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 TGFBIQ15582 683 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 OR2T5Q6IEZ7 315 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PDE12Q6L8Q7 609 aaKnown RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 SLC25A24Q6NUK1 477 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 AGMOQ6ZNB7 445 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 CHST15Q7LFX5 561 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 SLC30A8Q8IWU4 369 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 OR2T29Q8NH02 315 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 FNDC8Q8TC99 324 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PLEKHO2Q8TD55 490 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PIWIL1Q96J94 861 aaKnown RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 RPF2Q9H7B2 306 aaKnown RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 IFT172Q9UG01 1749 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 SLC35G4P0C7Q5 338 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 MNDAP41218 407 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 CHRNA4P43681 627 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 DNAJB13P59910 316 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PTGES3Q15185 160 aaKnown RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 TMEM44Q2T9K0 475 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 USP41Q3LFD5 358 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 DNAJB7Q7Z6W7 309 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-201ENST00000304636 PEX5LQ8IYB4 626 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 COLGALT2Q8IYK4 626 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 OR8H3Q8N146 312 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 CRYBG2Q8N1P7 616 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 ADAMTS15Q8TE58 950 aa12.64□□□□□ -0.39
COL3A1-201ENST00000304636 H0YAE9 185 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 K7EPI3 171 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 SIX3O95343 332 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 S100A6P06703 90 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 C7P10643 843 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms