RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PAPOLBQ9NRJ5 636 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM181Q9P2C4 612 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 CROTQ9UKG9 612 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 MTF2Q9Y483 593 aaPredicted RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 COL4A3Q01955 1670 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 C15orf38-AP3S2A0A0A6YYH1 394 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 SYCE1LA8MT33 242 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 WNT9AO14904 365 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 OR1I1O60431 355 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 GPR37L1O60883 481 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 DNAJA2O60884 412 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 KERAO60938 352 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 MATN4O95460 622 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 SRFP11831 508 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 ADRB3P13945 408 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 UGT1A6P19224 532 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 DRD1P21728 446 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 UGT1A1P22309 533 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 UGT1A4P22310 534 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 CTHP32929 405 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 UGT1A3P35503 534 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 UGT1A5P35504 534 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 PEX19P40855 299 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 RGS4P49798 205 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 CREB5Q02930 508 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 CAMK2GQ13555 558 aaPredicted RBP16.49■□□□□ 0.23
CPSF4-201ENST00000292476 CTSL3PQ5NE16 218 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 KANK2Q63ZY3 851 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 LIPIQ6XZB0 460 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF765Q7L2R6 523 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 EFL1Q7Z2Z2 1120 aaKnown RBP16.49■□□□□ 0.23
CPSF4-201ENST00000292476 ARPINQ7Z6K5 226 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 PIM3Q86V86 326 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 SPATA24Q86W54 205 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM102Q8N9M5 508 aaPredicted RBP16.49■□□□□ 0.23
CPSF4-201ENST00000292476 GOLM1Q8NBJ4 401 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF483Q8TF39 744 aaPredicted RBP16.49■□□□□ 0.23
CPSF4-201ENST00000292476 TSPEARQ8WU66 669 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 KIAA1191Q96A73 305 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 GPR21Q99679 349 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 LRFN3Q9BTN0 628 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 C1QTNF3Q9BXJ4 246 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 PACSIN3Q9UKS6 424 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 FBXL21Q9UKT6 434 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 NDUFAF1Q9Y375 327 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 DHRS7Q9Y394 339 aa16.49■□□□□ 0.23
CPSF4-201ENST00000292476 TCRBV3S1A0A5B6 114 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 E7ENX8 843 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 STX16-NPEPL1H3BU86 382 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 MAP3K13O43283 966 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 STAMBPO95630 424 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PDGFBP01127 241 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 OR56A5P0C7T3 313 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 GPX3P22352 226 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 KCNC1P48547 511 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 GRSF1Q12849 480 aaKnown RBP eCLIP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 RALGDSQ12967 914 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 STARD3Q14849 445 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 ACOX1Q15067 660 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 TLR1Q15399 786 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PPP1R3AQ16821 1122 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 TTLL9Q3SXZ7 439 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM52BQ4KMG9 183 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 ATP13A5Q4VNC0 1218 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 LRRC73Q5JTD7 316 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 NAIF1Q69YI7 327 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PAQR3Q6TCH7 311 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 HSD11B1LQ7Z5J1 315 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 LILRA2Q8N149 483 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PTGR2Q8N8N7 351 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PNPLA1Q8N8W4 532 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PDLIM5Q96HC4 596 aaKnown RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 PKP2Q99959 881 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 HOPXQ9BPY8 73 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 EFHD1Q9BUP0 239 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 RSPH9Q9H1X1 276 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 COPS7BQ9H9Q2 264 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-201ENST00000292476 SLC24A3Q9HC58 644 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 CCDC167Q9P0B6 97 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 FIS1Q9Y3D6 152 aa16.48■□□□□ 0.23
CPSF4-201ENST00000292476 IGLV3-16A0A075B6K0 115 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 K7EQS6 105 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 TXNDC9O14530 226 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 STX16O14662 325 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 AZIN1O14977 448 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 AREL1O15033 823 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 KPNA5O15131 536 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 CDK14O94921 469 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 AP2A2O94973 939 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 MTHFD2P13995 350 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 C5AR1P21730 350 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 CALRP27797 417 aaKnown RBP16.47■□□□□ 0.23
CPSF4-201ENST00000292476 SLC7A1P30825 629 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 NTSR1P30989 418 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 KIR2DL1P43626 348 aaPredicted RBP16.47■□□□□ 0.23
CPSF4-201ENST00000292476 SEMG2Q02383 582 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 FOXM1Q08050 763 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 GRIK2Q13002 908 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 LDLRAP1Q5SW96 308 aa16.47■□□□□ 0.23
CPSF4-201ENST00000292476 HENMT1Q5T8I9 393 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms