RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 RETSATQ6NUM9 610 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 OR2T12Q8NG77 320 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 SELENOMQ8WWX9 145 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 PLD4Q96BZ4 506 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 APOLD1Q96LR9 279 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 C2orf49Q9BVC5 232 aaPredicted RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 DLGAP4Q9Y2H0 992 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 PATJQ8NI35 1801 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 ANKRD36A6QL64 1941 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 STX16O14662 325 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 PRKD3O94806 890 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 MATN4O95460 622 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 ALBP02768 609 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 TFPTP0C1Z6 253 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 HSD17B1P14061 328 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 RFC2P35250 354 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 CLCN2P51788 898 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 EPHB3P54753 998 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 TRAF3Q13114 568 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 LRRC23Q53EV4 343 aaPredicted RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 TXNDC11Q6PKC3 985 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 TMEM26Q6ZUK4 368 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 GPR141Q7Z602 305 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 CACUL1Q86Y37 369 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 CHST14Q8NCH0 376 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 ADAMTS19Q8TE59 1207 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 MTERF1Q99551 399 aaKnown RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 C9orf16Q9BUW7 83 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 MRPL9Q9BYD2 267 aaKnown RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 PARVBQ9HBI1 364 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 INTS6Q9UL03 887 aaKnown RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 DMTF1Q9Y222 760 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 SLC22A14Q9Y267 594 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 INVSQ9Y283 1065 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 VPS9D1Q9Y2B5 631 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 FAM234BA2RU67 622 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 AQP12BA6NM10 295 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 GAPDHSO14556 408 aaPredicted RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 ZNF682O95780 498 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 URODP06132 367 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 VARSP26640 1264 aaKnown RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 PSMD8P48556 350 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 BNIP2Q12982 314 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 APOFQ13790 326 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 GTF2H3Q13889 308 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 CBX2Q14781 532 aaPredicted RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 LCN8Q6JVE9 175 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 DLEU7Q6UYE1 221 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 AQP12AQ8IXF9 295 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 RBFAQ8N0V3 343 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ZBTB2Q8N680 514 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 INPP5KQ9BT40 448 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 LRRC3Q9BY71 257 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 TRIM54Q9BYV2 358 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 POPDC3Q9HBV1 291 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 GPBP1L1Q9HC44 474 aaPredicted RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 ARMC1Q9NVT9 282 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 SCN5AQ14524 2016 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ACOX3O15254 700 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 CCL16O15467 120 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 OTCP00480 354 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 TRBC1P01850 177 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ASLP04424 464 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 AQP1P29972 269 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ATP4BP51164 291 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ESRRGP62508 458 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 TXNL4AP83876 142 aaKnown RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 CTBSQ01459 385 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 CHRNB3Q05901 458 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ABRQ12979 859 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 NOGQ13253 232 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 NKG7Q16617 165 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ZFAND4Q86XD8 727 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 LILRA3Q8N6C8 439 aaPredicted RBP16.3■□□□□ 0.2
VPS54-201ENST00000272322 ANKFN1Q8N957 763 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 BPIFB6Q8NFQ5 453 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ZFAND2BQ8WV99 257 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 ZNF382Q96SR6 550 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 DGCR6LQ9BY27 220 aa16.3■□□□□ 0.2
VPS54-201ENST00000272322 NEDD8-MDP1E9PL57 170 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 AP1G1O43747 822 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 EEDO75530 441 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 EPB42P16452 691 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 CALRP27797 417 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 HALP42357 657 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ADARP55265 1226 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 PMS2P3Q13401 168 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 DYNC1I2Q13409 638 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 DEFB115Q30KQ5 88 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ALG1LQ6GMV1 187 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 PRMT9Q6P2P2 845 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 CYB5D2Q8WUJ1 264 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 PEX13Q92968 403 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 FATE1Q969F0 183 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ZBTB18Q99592 522 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 RBM38Q9H0Z9 239 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 P2RY12Q9H244 342 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 SMPD3Q9NY59 655 aaPredicted RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 MYO1GB0I1T2 1018 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ALDH1A1P00352 501 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms