RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TBC1D3IA0A087WXS9 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3EA0A087X179 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3KA0A087X1G2 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ISPDA4D126 451 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3FA6NER0 549 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3LB9A6J9 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 B3GALT2O43825 422 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3HP0C7X1 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 RARAP10276 462 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC13A2Q13183 592 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3GQ6DHY5 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3CQ6IPX1 549 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3Q8IZP1 549 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 CPA6Q8N4T0 437 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 LINC00471Q8N535 108 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ALLCQ8N6M5 410 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SOCS4Q8WXH5 440 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SSX3Q99909 188 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TNS3Q68CZ2 1445 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SCELO95171 688 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SNTA1Q13424 505 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MOB2Q70IA6 237 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 AZIN2Q96A70 460 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TAAR1Q96RJ0 339 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 HEPHQ9BQS7 1158 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ELOA3DA6NLF2 546 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GNG2P59768 71 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CARTPTQ16568 116 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ELOA3BQ3SY89 546 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 PDSS1Q5T2R2 415 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 FAM151BQ6UXP7 276 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 FBXO16Q8IX29 292 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 PGAM4Q8N0Y7 254 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ELOA3Q8NG57 546 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 RAD9AQ99638 391 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CIB1Q99828 191 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 SNX15Q9NRS6 342 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF358Q9NW07 568 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 PPP1R14DQ9NXH3 145 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 KIAA1522Q9P206 1035 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF35P13682 527 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 HDCP19113 662 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 POM121L1PQ3SYA9 428 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 LDLRAP1Q5SW96 308 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CNTD1Q8N815 330 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 KATNBL1Q9H079 304 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 NDUFAF4Q9P032 175 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 RPL10P27635 214 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 HCAR3P49019 387 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TOR1AIP1Q5JTV8 583 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 SPPL2CQ8IUH8 684 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 C12orf50Q8NA57 414 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 OR52J3Q8NH60 311 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 RIPOR3Q96MK2 946 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 EPYCQ99645 322 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 POLR2J2Q9GZM3 115 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CDT1Q9H211 546 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 SDHAF3Q9NRP4 125 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 FAM83HQ6ZRV2 1179 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GTPBP3Q969Y2 492 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 SEMA3CQ99985 751 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 BLOC1S4Q9NUP1 217 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CENPBD1B2RD01 187 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TBX1O43435 398 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GADD45GO95257 159 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CTHP32929 405 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TMED4Q7Z7H5 227 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TXNRD3Q86VQ6 643 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ATAD1Q8NBU5 361 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 AUTS2Q8WXX7 1259 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ALPPP05187 535 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GKN3PP0CG01 181 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 COL6A2P12110 1019 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GRIK2Q13002 908 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 GAL3ST4Q96RP7 486 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 FTHL17Q9BXU8 183 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF99A8MXY4 864 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CLEC3AO75596 197 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 HMGN1P05114 100 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 LRIF1Q5T3J3 769 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 CDC42EP5Q6NZY7 148 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 HID1Q8IV36 788 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF578Q96N58 590 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF225Q9UK10 706 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 NR2E3Q9Y5X4 410 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ACOX3O15254 700 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 MAGEA11P43364 429 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ALDH3B2P48448 385 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 DUS1LQ6P1R4 473 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TTLQ8NG68 377 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 TUBG2Q9NRH3 451 aa13.73□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF143P52747 638 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 INAVAQ3KP66 663 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TNS4Q8IZW8 715 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 UBE2J2Q8N2K1 259 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 EZH1Q92800 747 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 AGO1Q9UL18 857 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 GRM6O15303 877 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 UGT2B4P06133 528 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms