RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 DPY30Q9C005 99 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 IFT80Q9P2H3 777 aaPredicted RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 NEUROG3Q9Y4Z2 214 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 C1orf232A0A0U1RR37 186 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 GAPDHSO14556 408 aaPredicted RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 DFNA5O60443 496 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 WDR47O94967 919 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 THRBP10828 461 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 GNPDA1P46926 289 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 PLD1Q13393 1074 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 BFSP2Q13515 415 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 CDH18Q13634 790 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 ZIK1Q3SY52 487 aaPredicted RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 FAM174BQ3ZCQ3 159 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 GPR107Q5VW38 600 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 KIAA1841Q6NSI8 718 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 METTL2BQ6P1Q9 378 aaKnown RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 CLDN19Q8N6F1 224 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 PAF1Q8N7H5 531 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 OR10A6Q8NH74 314 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 ZNF461Q8TAF7 563 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 RDH12Q96NR8 316 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 DCUN1D5Q9BTE7 237 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 TM6SF2Q9BZW4 377 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 ING2Q9H160 280 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 SAGE1Q9NXZ1 904 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 FAF1Q9UNN5 650 aaPredicted RBP16.11■□□□□ 0.17
HOXD3-201ENST00000249440 OR51B4Q9Y5P0 310 aa16.11■□□□□ 0.17
HOXD3-201ENST00000249440 A0A0J9YVX5 310 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 G3V2T6 193 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 H0Y858 1186 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 H3BMQ9 156 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 K7EPI3 171 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 FFAR3O14843 346 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 GPR42O15529 346 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 LATS1O95835 1130 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 HPRP00739 348 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 EBLN1P0CF75 366 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 MBL2P11226 248 aaPredicted RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ACRV1P26436 265 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 CSKP41240 450 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 GDF5P43026 501 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 PPP3CCP48454 512 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 SMAD3P84022 425 aaKnown RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 CYP4F3Q08477 520 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 IMPG1Q17R60 797 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 FKBP9P1Q75LS8 142 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TRIM46Q7Z4K8 759 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 CRIPAKQ8N1N5 446 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ZBTB2Q8N680 514 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 DCAF4L2Q8NA75 395 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 HJURPQ8NCD3 748 aaPredicted RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TTC16Q8NEE8 873 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 LKAAEAR1Q8TD35 194 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 RHBDF1Q96CC6 855 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 AURKBQ96GD4 344 aaPredicted RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TRMT2BQ96GJ1 504 aaKnown RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 CNDP2Q96KP4 475 aaKnown RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 COG8Q96MW5 612 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 NTMT1Q9BV86 223 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 IL26Q9NPH9 171 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TLR9Q9NR96 1032 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 KLQ9UEF7 1012 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ADGRE2Q9UHX3 823 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ZNF490Q9ULM2 529 aaPredicted RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 AP3M1Q9Y2T2 418 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 PRSS21Q9Y6M0 314 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TRBC1P01850 177 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 PGRP06401 933 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 EEF1B2P24534 225 aaKnown RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 YAP1P46937 504 aaKnown RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 STT3AP46977 705 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 BCL2L1Q07817 233 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 PHKG1Q16816 387 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 RETSATQ6NUM9 610 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ITIH5Q86UX2 942 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 ZNF548Q8NEK5 533 aaPredicted RBP16.1■□□□□ 0.17
HOXD3-201ENST00000249440 PLGRKTQ9HBL7 147 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 DNAJB9Q9UBS3 223 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TRPS1Q9UHF7 1281 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 CRLS1Q9UJA2 301 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 GMEB1Q9Y692 573 aa16.1■□□□□ 0.17
HOXD3-201ENST00000249440 TRBV5-4A0A0C4DH59 114 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 GLYATL1P3A0A0U1RQE8 302 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.09■□□□□ 0.17
HOXD3-201ENST00000249440 PFDN1O60925 122 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 SEC22BO75396 215 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 ATE1O95260 518 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 TCF3P15923 654 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 EPB42P16452 691 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 PIK3CGP48736 1102 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 HMGCS1Q01581 520 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 EPS8Q12929 822 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 NEDD8Q15843 81 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 GPRC6AQ5T6X5 926 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 TTC23Q5W5X9 447 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 ZNF773Q6PK81 442 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 NECAB2Q7Z6G3 386 aa16.09■□□□□ 0.17
HOXD3-201ENST00000249440 LIX1Q8N485 282 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms