RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RMDN2Q96LZ7 410 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 GPR21Q99679 349 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 OLFM1Q99784 485 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 TAS2R13Q9NYV9 303 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 SCHIP1Q9P0W5 487 aaPredicted RBP19.3■□□□□ 0.68
UPF3A-211ENST00000618700 MTO1Q9Y2Z2 717 aaKnown RBP19.3■□□□□ 0.68
UPF3A-211ENST00000618700 DHRS7Q9Y394 339 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 U3KQA8 63 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 CEP250Q9BV73 2442 aa19.3■□□□□ 0.68
UPF3A-211ENST00000618700 PDZK1P1A8MUH7 402 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SH3BP5O60239 455 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 CBFA2T3O75081 653 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SLCO2B1O94956 709 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SHBGP04278 402 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 NUDT17P0C025 328 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SLC2A4P14672 509 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 PDHA2P29803 388 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 ATP5DP30049 168 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 HSPA14Q0VDF9 509 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 PROX2Q3B8N5 592 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 CAPRIN2Q6IMN6 1127 aaKnown RBP19.29■□□□□ 0.68
UPF3A-211ENST00000618700 PDZD3Q86UT5 571 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 VRK3Q8IV63 474 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SLC22A15Q8IZD6 547 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 ZBTB2Q8N680 514 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SIDT2Q8NBJ9 832 aaKnown RBP19.29■□□□□ 0.68
UPF3A-211ENST00000618700 DCAKDQ8WVC6 231 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 PATE1Q8WXA2 126 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 TMEM159Q96B96 161 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 MRRFQ96E11 262 aaKnown RBP19.29■□□□□ 0.68
UPF3A-211ENST00000618700 WWP1Q9H0M0 922 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SARS2Q9NP81 518 aaKnown RBP19.29■□□□□ 0.68
UPF3A-211ENST00000618700 SIRPGQ9P1W8 387 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 ZNF180Q9UJW8 692 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 VWA7Q9Y334 891 aa19.29■□□□□ 0.68
UPF3A-211ENST00000618700 KIR2DS5A0A0G2JLQ3 304 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 A0A0G2JNG1 304 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 HMX2A2RU54 273 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 OR5K4A6NMS3 321 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 KIR2DS3K7RE56 304 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 INHBAP08476 426 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 ITGA2BP08514 1039 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 SLC35G4P0C7Q5 338 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 TAS2R39P59534 338 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 POU4F1Q01851 419 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 KIR2DS5Q14953 304 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 CLCA4Q14CN2 919 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 UGT3A1Q6NUS8 523 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 SPNS2Q8IVW8 549 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 ZNF454Q8N9F8 522 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 SLC37A2Q8TED4 501 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 SETD7Q8WTS6 366 aaKnown RBP19.28■□□□□ 0.68
UPF3A-211ENST00000618700 TRMT6Q9UJA5 497 aaKnown RBP19.28■□□□□ 0.68
UPF3A-211ENST00000618700 PSMD13Q9UNM6 376 aa19.28■□□□□ 0.68
UPF3A-211ENST00000618700 OR52A4PA6NMU1 304 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 POC1B-GALNT4F8VUJ3 575 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 ERLIN1O75477 346 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 ACADLP28330 430 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 SKIV2L2P42285 1042 aaKnown RBP19.27■□□□□ 0.68
UPF3A-211ENST00000618700 HALP42357 657 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 MSH2P43246 934 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 MAZP56270 477 aaKnown RBP19.27■□□□□ 0.68
UPF3A-211ENST00000618700 UBE2IP63279 158 aaKnown RBP19.27■□□□□ 0.68
UPF3A-211ENST00000618700 ZKSCAN8Q15776 578 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-211ENST00000618700 TTLL9Q3SXZ7 439 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 C14orf28Q4W4Y0 310 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 ACSBG2Q5FVE4 666 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 HNRNPLLQ8WVV9 542 aaKnown RBP19.27■□□□□ 0.68
UPF3A-211ENST00000618700 INPP5DQ92835 1189 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 APOLD1Q96LR9 279 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 CAMK1GQ96NX5 476 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 POPDC3Q9HBV1 291 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 NCKIPSDQ9NZQ3 722 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 SLC24A2Q9UI40 661 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 SLC39A10Q9ULF5 831 aa19.27■□□□□ 0.68
UPF3A-211ENST00000618700 EIF3FO00303 357 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-211ENST00000618700 SLC30A4O14863 429 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 TM4SF5O14894 197 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 TCEA3O75764 348 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 WISP3O95389 354 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-211ENST00000618700 MTHFD1P11586 935 aaKnown RBP19.26■□□□□ 0.67
UPF3A-211ENST00000618700 CKMT1AP12532 417 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 FASLGP48023 281 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 SERPINB9P50453 376 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 PGGT1BP53609 377 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 BMPR2Q13873 1038 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 RPE65Q16518 533 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 CEP97Q8IW35 865 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 CPNE9Q8IYJ1 553 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 RHBDD1Q8TEB9 315 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 C12orf66Q96MD2 445 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 INSM2Q96T92 566 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-211ENST00000618700 CCDC77Q9BR77 488 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 KRTAP3-3Q9BYR6 98 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 KRTAP3-2Q9BYR7 98 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 CAB39LQ9H9S4 337 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 PPCSQ9HAB8 311 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 POT1Q9NUX5 634 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 ZNF624Q9P2J8 865 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-211ENST00000618700 IKBKGQ9Y6K9 419 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms