RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RPIAP49247 311 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CARSP49589 748 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 TTPAP49638 278 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 DUSP3P51452 185 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 LAMB3Q13751 1172 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CAPRIN2Q6IMN6 1127 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PIM3Q86V86 326 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 DCBLD1Q8N8Z6 715 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 OR5AR1Q8NGP9 310 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 MDM1Q8TC05 714 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 HM13Q8TCT9 377 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GLMNQ92990 594 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PMEPA1Q969W9 287 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CERS2Q96G23 380 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 ZNF514Q96K75 400 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 RHOXF2Q9BQY4 288 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PPANQ9NQ55 473 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 FBXO5Q9UKT4 447 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CLCA2Q9UQC9 943 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 ENTPD2Q9Y5L3 495 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 MDC1Q14676 2089 aaKnown RBP13.17□□□□□ -0.3
LINC00540-202ENST00000616974 AHSGP02765 367 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 MPOP05164 745 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 XRCC1P18887 633 aaPredicted RBP13.17□□□□□ -0.3
LINC00540-202ENST00000616974 CALCOCO2Q13137 446 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 NR1D2Q14995 579 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 EFTUD2Q15029 972 aaKnown RBP eCLIP13.17□□□□□ -0.3
LINC00540-202ENST00000616974 ISXQ2M1V0 245 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 CCSMST1Q4G0I0 132 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 STEAP4Q687X5 459 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 CERS6Q6ZMG9 384 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 TMEM26Q6ZUK4 368 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.17□□□□□ -0.3
LINC00540-202ENST00000616974 XKR8Q9H6D3 395 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 KCNK4Q9NYG8 393 aa13.17□□□□□ -0.3
LINC00540-202ENST00000616974 MAGEB16A2A368 324 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 MTHFD1P11586 935 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 LEPRP48357 1165 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 ILKQ13418 452 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 THOC5Q13769 683 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 DNAJC21Q5F1R6 531 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SNAP47Q5SQN1 464 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 TEDDM1Q5T9Z0 273 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 AGAP9Q5VTM2 703 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 FBXO38Q6PIJ6 1188 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 WASH2PQ6VEQ5 465 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 CCNI2Q6ZMN8 369 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SIDT2Q8NBJ9 832 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 IFT81Q8WYA0 676 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 GFM1Q96RP9 751 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SLC38A3Q99624 504 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 WASH6PQ9NQA3 447 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 ANGPTL2Q9UKU9 493 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 BSNQ9UPA5 3926 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 KIR2DS5A0A0G2JLQ3 304 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 A0A0G2JNG1 304 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 A8MU76 341 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 KIR2DS3K7RE56 304 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 GPC4O75487 556 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 VIPP01282 170 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SLC35G4P0C7Q5 338 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 OR56A5P0C7T3 313 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 MYBL2P10244 700 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 AOAHP28039 575 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 ACADLP28330 430 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 DEKP35659 375 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 BIRC2Q13490 618 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SPIDRQ14159 915 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 KIR2DS5Q14953 304 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 C16orf72Q14CZ0 275 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 PTRHD1Q6GMV3 140 aaKnown RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 MRNIPQ6NTE8 343 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 SLITRK4Q8IW52 837 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 TRIM48Q8IWZ4 208 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 C2CD4AQ8NCU7 369 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 CFAP61Q8NHU2 1237 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 GATA6Q92908 595 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 CXorf40BQ96DE9 158 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 HGH1Q9BTY7 390 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 L2HGDHQ9H9P8 463 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 CCDC88CQ9P219 2028 aa13.16□□□□□ -0.3
LINC00540-202ENST00000616974 DNMT3AQ9Y6K1 912 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-202ENST00000616974 TRABD2BA6NFA1 517 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ESPNB1AK53 854 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 FAM155BO75949 473 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 AP2A2O94973 939 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 VCLP18206 1134 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 PAMP19021 973 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ITIH1P19827 911 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 OGNP20774 298 aaKnown RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 CDKN2DP55273 166 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 AARS2Q5JTZ9 985 aaKnown RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 SPANXN3Q5MJ09 141 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 FOXR1Q6PIV2 292 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 SLC9B2Q86UD5 537 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 NCSTNQ92542 709 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 RAB17Q9H0T7 212 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 LRRC4CQ9HCJ2 640 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 MOCS1Q9NZB8 636 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 NCKIPSDQ9NZQ3 722 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms