RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 FAM71DQ8N9W8 422 aa18.5■□□□□ 0.55
CDX1-202ENST00000616154 CLEC18CQ8NCF0 446 aa18.5■□□□□ 0.55
CDX1-202ENST00000616154 ZNF514Q96K75 400 aaPredicted RBP18.5■□□□□ 0.55
CDX1-202ENST00000616154 CD180Q99467 661 aa18.5■□□□□ 0.55
CDX1-202ENST00000616154 ANKMY1Q9P2S6 941 aa18.5■□□□□ 0.55
CDX1-202ENST00000616154 PSMD13Q9UNM6 376 aa18.5■□□□□ 0.55
CDX1-202ENST00000616154 OR5K3A6NET4 321 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 TLCD2A6NGC4 264 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 OR2AG2A6NM03 316 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 BUD23O43709 281 aaKnown RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 RFPL1O75677 317 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 LPOP22079 712 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 PMS2P54278 862 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 ACY1Q03154 408 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 OLIG2Q13516 323 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 KCNAB1Q14722 419 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 PLCL1Q15111 1095 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 RPS6KA1Q15418 735 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 LONRF2Q1L5Z9 754 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 DNTTIP2Q5QJE6 756 aaKnown RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 TMEM135Q86UB9 458 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 MAP3K3Q99759 626 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 TWSG1Q9GZX9 223 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 IMP3Q9NV31 184 aaKnown RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 ARL5AQ9Y689 179 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 USP9XQ93008 2570 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 USP9YO00507 2555 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 PIPSLA2A3N6 862 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 C2orf81A6NN90 581 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 K7EM74 188 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 STX7O15400 261 aaKnown RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 METTL18O95568 372 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 EBLN1P0CF75 366 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 NR1D1P20393 614 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 STIP1P31948 543 aaKnown RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 ZNF140P52738 457 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 GDF10P55107 478 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 XIAPP98170 497 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 PDE1BQ01064 536 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 P3H1Q32P28 736 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 FNBP1LQ5T0N5 605 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 SYT10Q6XYQ8 523 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 SLC13A5Q86YT5 568 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 APLFQ8IW19 511 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 ZFPM2Q8WW38 1151 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 SEC14L1Q92503 715 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 NAPGQ99747 312 aaPredicted RBP18.49■□□□□ 0.55
CDX1-202ENST00000616154 TBL1YQ9BQ87 522 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 TMEM121Q9BTD3 319 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 ACTL8Q9H568 366 aa18.49■□□□□ 0.55
CDX1-202ENST00000616154 CTAGE9A4FU28 777 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 KLHL33A6NCF5 533 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 MGAT4DA6NG13 374 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 LIASO43766 372 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 PRAMEF1O95521 474 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 MSH3P20585 1137 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 PSMA3P25788 255 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 PBLDP30039 288 aaPredicted RBP18.48■□□□□ 0.55
CDX1-202ENST00000616154 AKT1P31749 480 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 ARL4DP49703 201 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 HSD11B2P80365 405 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 SEL1L2Q5TEA6 688 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 CERS6Q6ZMG9 384 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 ARHGEF18Q6ZSZ5 1173 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 OOSP2Q86WS3 158 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 D2HGDHQ8N465 521 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 BEND7Q8N7W2 519 aaPredicted RBP18.48■□□□□ 0.55
CDX1-202ENST00000616154 OR4K2Q8NGD2 314 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 ZNF398Q8TD17 642 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 MIB2Q96AX9 1013 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 LRRC45Q96CN5 670 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 INSM2Q96T92 566 aaPredicted RBP18.48■□□□□ 0.55
CDX1-202ENST00000616154 APOL2Q9BQE5 337 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 GPR87Q9BY21 358 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 WWP1Q9H0M0 922 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 LRRC40Q9H9A6 602 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 FGF21Q9NSA1 209 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 HRASLS2Q9NWW9 162 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 TLK1Q9UKI8 766 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 ACSL5Q9ULC5 683 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 SNX12Q9UMY4 172 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 PLAAQ9Y263 795 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 MAN2B2Q9Y2E5 1009 aa18.48■□□□□ 0.55
CDX1-202ENST00000616154 CFAP20Q9Y6A4 193 aaKnown RBP18.48■□□□□ 0.55
CDX1-202ENST00000616154 UBA6A0AVT1 1052 aaPredicted RBP18.47■□□□□ 0.55
CDX1-202ENST00000616154 CES2O00748 559 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 LDB2O43679 373 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 CRTAMO95727 393 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 AP2A1O95782 977 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 CD97P48960 835 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 PTPRCAPQ14761 206 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 BCL7AQ4VC05 210 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 ASB18Q6ZVZ8 466 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 DET1Q7L5Y6 550 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 CARFQ8N187 725 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 TEX19Q8NA77 164 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 OR2L2Q8NH16 312 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 ATG4AQ8WYN0 398 aa18.47■□□□□ 0.55
CDX1-202ENST00000616154 AKIRIN1Q9H9L7 192 aaPredicted RBP18.47■□□□□ 0.55
CDX1-202ENST00000616154 SPTAN1Q13813 2472 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms