RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 BMPERQ8N8U9 685 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 NAT6Q93015 286 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 GRAMD1AQ96CP6 724 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 PBKQ96KB5 322 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 SEMA4CQ9C0C4 833 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 POLR1BQ9H9Y6 1135 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 HAUS2Q9NVX0 235 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ASIC3Q9UHC3 531 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 TDRKHQ9Y2W6 561 aaKnown RBP5.56□□□□□ -1.52
CPNE3-208ENST00000614678 SCN2AQ99250 2005 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 MGAT4DA6NG13 374 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 EFCAB7A8K855 629 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 CD3EAPO15446 510 aaKnown RBP5.56□□□□□ -1.52
CPNE3-208ENST00000614678 IDSP22304 550 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 PEBP1P30086 187 aaKnown RBP5.56□□□□□ -1.52
CPNE3-208ENST00000614678 BDKRB1P46663 353 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 RPIAP49247 311 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 DUSP3P51452 185 aaPredicted RBP5.56□□□□□ -1.52
CPNE3-208ENST00000614678 LIMK2P53671 638 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 PRAMEP78395 509 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ACVR1Q04771 509 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 CACNG1Q06432 222 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ILKQ13418 452 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ZNF460Q14592 562 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 PPP1R7Q15435 360 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ZIC1Q15915 447 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 HSP90AA5PQ58FG0 334 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 LDLRAP1Q5SW96 308 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ARHGAP40Q5TG30 622 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 IZUMO3Q5VZ72 239 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 LRRC8BQ6P9F7 803 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 PCSK4Q6UW60 755 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 TMEM135Q86UB9 458 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 ELMO1Q92556 727 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 DEPDC7Q96QD5 511 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 IKZF3Q9UKT9 509 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 CHMP2BQ9UQN3 213 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 RPS6KL1Q9Y6S9 549 aa5.56□□□□□ -1.52
CPNE3-208ENST00000614678 HEATR9A2RTY3 570 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 CDRT15L2A8MXV6 281 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 RASSF9O75901 435 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 STATHP02808 62 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 GRIA3P42263 894 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 SLC1A2P43004 574 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 MAGEA3P43357 314 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ITGA8P53708 1063 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 NFKB2Q00653 900 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 E2F1Q01094 437 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 TLE3Q04726 772 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 DHX34Q14147 1143 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 NR1D2Q14995 579 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 TBC1D25Q3MII6 688 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 BBS9Q3SYG4 887 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ANKRD20A4Q4UJ75 823 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 PCID2Q5JVF3 399 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 RBM20Q5T481 1227 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 MBOAT1Q6ZNC8 495 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 OTUD6BQ8N6M0 293 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 LINC01555Q8NAE3 123 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 NOA1Q8NC60 698 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 PPFIBP2Q8ND30 876 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 CXorf40BQ96DE9 158 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 AHCYL2Q96HN2 611 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FERD3LQ96RJ6 166 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 TIMM29Q9BSF4 260 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FAM60AQ9NP50 221 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 SMYD2Q9NRG4 433 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ABCF3Q9NUQ8 709 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 SLC24A2Q9UI40 661 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 PCSK5Q92824 1860 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 MTHFD1P11586 935 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 XRCC1P18887 633 aaPredicted RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 KPNA2P52292 529 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FOXM1Q08050 763 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 CLN3Q13286 438 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FASTKQ14296 549 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 GRB7Q14451 532 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 PLCL1Q15111 1095 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 GPR19Q15760 415 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 CAPRIN2Q6IMN6 1127 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ARHGAP22Q7Z5H3 698 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 TRIM48Q8IWZ4 208 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 SIDT2Q8NBJ9 832 aaKnown RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 OR52E1Q8NGJ3 308 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 DCUN1D1Q96GG9 259 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FERMT1Q9BQL6 677 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 KIFC1Q9BW19 673 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 HEATR5BQ9P2D3 2071 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 CTAGE9A4FU28 777 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 BTN3A1O00481 513 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 NTRK1P04629 796 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 EBLN1P0CF75 366 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 AMD1P17707 334 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 HADHAP40939 763 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ELK3P41970 407 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 GTF2H3Q13889 308 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 SKIDA1Q1XH10 827 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ZXDCQ2QGD7 858 aaPredicted RBP5.55□□□□□ -1.52
CPNE3-208ENST00000614678 FBXO48Q5FWF7 155 aa5.55□□□□□ -1.52
CPNE3-208ENST00000614678 ZNF470Q6ECI4 717 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms