RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 KIR3DX1Q9H7L2 352 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 PISDQ9UG56 409 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SLC24A2Q9UI40 661 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 GNPTGQ9UJJ9 305 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 MN1Q10571 1320 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 ZCWPW2A0A1B0GU75 182 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 UBA6A0AVT1 1052 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 SLC5A10A0PJK1 596 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 EFCAB8A8MWE9 144 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 SEC31AO94979 1220 aaKnown RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 C9P02748 559 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 ITGB6P18564 788 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 RPS3P23396 243 aaKnown RBP eCLIP16.44■□□□□ 0.222e-9■■■□□ 19.2
TRIM28-215ENST00000601150 CSTF2P33240 577 aaKnown RBP eCLIP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 CAPZBP47756 277 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 PLOD1Q02809 727 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 C2orf54Q08AI8 447 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 THOC5Q13769 683 aaKnown RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 BRD3Q15059 726 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 LONRF1Q17RB8 773 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 HIBCHQ6NVY1 386 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 MAATS1Q7Z4T9 603 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 AGBL5Q8NDL9 886 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 JPH3Q8WXH2 748 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 RSC1A1Q92681 617 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 TFGQ92734 400 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-215ENST00000601150 FERD3LQ96RJ6 166 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 NAT9Q9BTE0 207 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 TRIM31Q9BZY9 425 aa16.44■□□□□ 0.22
TRIM28-215ENST00000601150 ANKRD11Q6UB99 2663 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 FAM187AA6NFU0 413 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 IQCF5A8MTL0 148 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 A8MU76 341 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 CDRT15L2A8MXV6 281 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 NDC80O14777 642 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 CAPN5O15484 640 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 PGAM1P18669 254 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ITIH1P19827 911 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 CCR7P32248 378 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ITGA8P53708 1063 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 GFERP55789 205 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 EIF3BP55884 814 aaKnown RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 PCBP4P57723 403 aaKnown RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 DHX9Q08211 1270 aaKnown RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ZNF470Q6ECI4 717 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 NAPRTQ6XQN6 538 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ARHGAP22Q7Z5H3 698 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 CLEC14AQ86T13 490 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 CILP2Q8IUL8 1156 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 PDIK1LQ8N165 341 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.43■□□□□ 0.226e-15■■■■■ 82.6
TRIM28-215ENST00000601150 ACVR1CQ8NER5 493 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 LKAAEAR1Q8TD35 194 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ASZ1Q8WWH4 475 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 LPGAT1Q92604 370 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 TRIM44Q96DX7 344 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 ZDHHC12Q96GR4 267 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 C9orf72Q96LT7 481 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 TGM7Q96PF1 710 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 PANX3Q96QZ0 392 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 EBNA1BP2Q99848 306 aaKnown RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 RAB33BQ9H082 229 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 MVB12BQ9H7P6 319 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 C20orf96Q9NUD7 363 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 INTS10Q9NVR2 710 aaKnown RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 IL1RAPL1Q9NZN1 696 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 EPHA6Q9UF33 1036 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 KLHL3Q9UH77 587 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 VPS9D1Q9Y2B5 631 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 PCDHGA7Q9Y5G6 932 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 FAM169AQ9Y6X4 670 aa16.43■□□□□ 0.22
TRIM28-215ENST00000601150 KMT2BQ9UMN6 2715 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-215ENST00000601150 BHMG1C9JSJ3 638 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 TTC4O95801 387 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 APOA4P06727 396 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 CCL4P13236 92 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 EIF2S3P41091 472 aaKnown RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 ETV5P41161 510 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 MAPK10P53779 464 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 ADARP55265 1226 aaKnown RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 CKAP4Q07065 602 aaKnown RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 TMED2Q15363 201 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 HIF1AQ16665 826 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 BBS9Q3SYG4 887 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 MSS51Q4VC12 460 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 CENPUQ71F23 418 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 ZNF572Q7Z3I7 529 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 LMNTD2Q8IXW0 634 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 KRT222Q8N1A0 295 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 BBOF1Q8ND07 529 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 PHC3Q8NDX5 983 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 CALML6Q8TD86 181 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.42■□□□□ 0.22
TRIM28-215ENST00000601150 SNX24Q9Y343 169 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 FREM2Q5SZK8 3169 aa16.42■□□□□ 0.22
TRIM28-215ENST00000601150 ADAMTS20P59510 1910 aa16.41■□□□□ 0.22
TRIM28-215ENST00000601150 ASPMQ8IZT6 3477 aa16.41■□□□□ 0.22
TRIM28-215ENST00000601150 H3BMM5 538 aa16.41■□□□□ 0.22
TRIM28-215ENST00000601150 KPNA5O15131 536 aa16.41■□□□□ 0.22
TRIM28-215ENST00000601150 NVLO15381 856 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms