RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 P2RY8Q86VZ1 359 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 ANKRD46Q86W74 232 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 MTFMTQ96DP5 389 aaKnown RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 KATNAL1Q9BW62 490 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 NUP214P35658 2090 aaPredicted RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 B3GAT3O94766 335 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 POMCP01189 267 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 CHRNA1P02708 482 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 DBTP11182 482 aaKnown RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 MRPS6P82932 125 aaKnown RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 GPRIN3Q6ZVF9 776 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 CCDC80Q76M96 950 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 MICU2Q8IYU8 434 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 PGAP3Q96FM1 320 aaPredicted RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 IMP4Q96G21 291 aaKnown RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 OSBPL10Q9BXB5 764 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 GOLGA8CPA6NN73 597 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 F8W810 466 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ZNF682O95780 498 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 TBX18O95935 607 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 LCKP06239 509 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 HOXC8P31273 242 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 RENBPP51606 427 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 NEK2P51955 445 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ERVK-8P63133 956 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 AP5B1Q2VPB7 878 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 FAM174BQ3ZCQ3 159 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 TIGD5Q53EQ6 642 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 CYP20A1Q6UW02 462 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 SPATC1Q76KD6 591 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 SPATA19Q7Z5L4 167 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 PGBD5Q8N414 524 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 MFSD4AQ8N468 514 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ZNF540Q8NDQ6 660 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 OR4L1Q8NH43 312 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 RMDN1Q96DB5 314 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ZNF583Q96ND8 569 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ZNF599Q96NL3 588 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ARHGAP39Q9C0H5 1083 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 TPK1Q9H3S4 243 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 FAM234BA2RU67 622 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ARL5CA6NH57 179 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 NDUFS3O75489 264 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 MT-ND2P03891 347 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 MMP2P08253 660 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ERVPABLB-1P60509 514 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ISL1P61371 349 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 HMGCS1Q01581 520 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 SLC14A2Q15849 920 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ATAD3BQ5T9A4 648 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 LETMD1Q6P1Q0 360 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 RTL3Q8N8U3 475 aaKnown RBP18.05■□□□□ 0.48
UPF1-210ENST00000600689 FAM83FQ8NEG4 500 aaPredicted RBP18.05■□□□□ 0.48
UPF1-210ENST00000600689 NSMCE3Q96MG7 304 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 ASPSCR1Q9BZE9 553 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 NMUR1Q9HB89 426 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 SCUBE2Q9NQ36 999 aa18.05■□□□□ 0.48
UPF1-210ENST00000600689 LINC00854A0A1B0GVQ3 168 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 FAM92AA1XBS5 289 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 SNPHO15079 494 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 PAPSS2O95340 614 aaPredicted RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 MYCLP1P12525 358 aaPredicted RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 SPNP16150 400 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 EPHA2P29317 976 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 CLK1P49759 484 aaKnown RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 RAD51Q06609 339 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 CDK5R2Q13319 367 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 RAB41Q5JT25 222 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 DEPDC1Q5TB30 811 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 LAIR1Q6GTX8 287 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 LRRTM3Q86VH5 581 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 KRTCAP2Q8N6L1 136 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 GOLM1Q8NBJ4 401 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 EEF1AKMT1Q8WVE0 214 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 FUBP1Q96AE4 644 aaKnown RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 C8orf4Q9NR00 106 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 ORC6Q9Y5N6 252 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 NOX1Q9Y5S8 564 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 THP07101 528 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 GGT1P19440 569 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 ACVRL1P37023 503 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 NFKB2Q00653 900 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 ZFAND4Q86XD8 727 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 MCFD2Q8NI22 146 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 CNDP2Q96KP4 475 aaKnown RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 ASB2Q96Q27 587 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 AARSD1Q9BTE6 412 aaKnown RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 NMRK2Q9NPI5 230 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 DNAJB9Q9UBS3 223 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 KERAO60938 352 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 SERPINA1P01009 418 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 UROSP10746 265 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 PCMT1P22061 227 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 SOWAHCQ53LP3 525 aaPredicted RBP18.04■□□□□ 0.48
UPF1-210ENST00000600689 AGAP7PQ5VUJ5 663 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 AGMOQ6ZNB7 445 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 AHSA2Q719I0 299 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 CCDC103Q8IW40 242 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 EID3Q8N140 333 aa18.04■□□□□ 0.48
UPF1-210ENST00000600689 EFHBQ8N7U6 833 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms