RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZNF500O60304 480 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 C1QAP02745 245 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 AHSGP02765 367 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 CAPNS1P04632 268 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 PKMP14618 531 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 TYRP1P17643 537 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 ECHS1P30084 290 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 SSTR1P30872 391 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 HALP42357 657 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 PGGT1BP53609 377 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 ADARP55265 1226 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 GPX6P59796 221 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 RPA4Q13156 261 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 BIRC2Q13490 618 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 BOP1Q14137 746 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 SPIDRQ14159 915 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 RBM44Q6ZP01 1051 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 CAPN12Q6ZSI9 719 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 LRRC6Q86X45 466 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 SLITRK4Q8IW52 837 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 CNTN4Q8IWV2 1026 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 CEP112Q8N8E3 955 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 ATXN7L3BQ96GX2 97 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 UCK1Q9HA47 277 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 POT1Q9NUX5 634 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 INTS10Q9NVR2 710 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 PSAT1Q9Y617 370 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 GOLGA4Q13439 2230 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 LILRA5A6NI73 299 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 CXorf49A8MYA2 514 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 TCEA3O75764 348 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 GSTM1P09488 218 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC35G4P0C7Q5 338 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 MAPK9P45984 424 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 LEPRP48357 1165 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 GSTM4Q03013 218 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 HSPA14Q0VDF9 509 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 FRG1Q14331 258 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 GBX1Q14549 363 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 PDZD3Q86UT5 571 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 TRIM48Q8IWZ4 208 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 ACVR1CQ8NER5 493 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 GIMAP7Q8NHV1 300 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 NCSTNQ92542 709 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 RSC1A1Q92681 617 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 TFGQ92734 400 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 SH3KBP1Q96B97 665 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 PRR11Q96HE9 360 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 C9orf72Q96LT7 481 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 FAM167BQ9BTA0 163 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 VPS37BQ9H9H4 285 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 GNPTGQ9UJJ9 305 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 RP1P56715 2156 aa13.86□□□□□ -0.19
SHKBP1-217ENST00000598558 AKAP13Q12802 2813 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 IGHV5-10-1A0A0J9YXX1 117 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 C1QTNF9BB2RNN3 333 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 NDC80O14777 642 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 EIF3HO15372 352 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 SLCO2B1O94956 709 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 CPNE6O95741 557 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 ESR1P03372 595 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 C1QTNF9P0C862 333 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 MAGEA4P43358 317 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 CD151P48509 253 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 CLCN7P51798 805 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 GFERP55789 205 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 PPP1CAP62136 330 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 FOXK2Q01167 660 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 CAV1Q03135 178 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 ABRQ12979 859 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 PRKG2Q13237 762 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 GLE1Q53GS7 698 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 RBM20Q5T481 1227 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 RNF187Q5TA31 235 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 PIM3Q86V86 326 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 CCDC25Q86WR0 208 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 LMNTD2Q8IXW0 634 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC22A15Q8IZD6 547 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 LMNTD1Q8N9Z9 388 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 OR5AR1Q8NGP9 310 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 WDR48Q8TAF3 677 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 PYROXD1Q8WU10 500 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 DEPDC7Q96QD5 511 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 FERD3LQ96RJ6 166 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 NDNQ99608 321 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 AARSD1Q9BTE6 412 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 LATS2Q9NRM7 1088 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 PDP2Q9P2J9 529 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC24A2Q9UI40 661 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 RUVBL2Q9Y230 463 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 NFS1Q9Y697 457 aa13.85□□□□□ -0.19
SHKBP1-217ENST00000598558 ESPNB1AK53 854 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 UBXN7O94888 489 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 PROS1P07225 676 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 CHRM3P20309 590 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 LIMK2P53671 638 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 EPHA4P54764 986 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 INHBCP55103 352 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 GPLD1P80108 840 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms