RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 HGFP14210 728 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 TYRP1P17643 537 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 AMD1P17707 334 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 NDUFS1P28331 727 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 CCR7P32248 378 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 EIF3BP55884 814 aaKnown RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 PLOD1Q02809 727 aaPredicted RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 CKAP4Q07065 602 aaKnown RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 THOC5Q13769 683 aaKnown RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 CRYMQ14894 314 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 LONRF1Q17RB8 773 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 TBC1D25Q3MII6 688 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 BBS9Q3SYG4 887 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 ZNF470Q6ECI4 717 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 PTRHD1Q6GMV3 140 aaKnown RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 NAPRTQ6XQN6 538 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 MAATS1Q7Z4T9 603 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 PLXDC1Q8IUK5 500 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 PDIK1LQ8N165 341 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 KRT222Q8N1A0 295 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.21□□□□□ -0.13
VRK3-206ENST00000594090 ZFPM2Q8WW38 1151 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 JPH3Q8WXH2 748 aaPredicted RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 PWWP2AQ96N64 755 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 EBNA1BP2Q99848 306 aaKnown RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 AKAP7Q9P0M2 348 aaPredicted RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 COLEC10Q9Y6Z7 277 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 CEP295Q9C0D2 2601 aa14.21□□□□□ -0.14
VRK3-206ENST00000594090 CDRT15L2A8MXV6 281 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 NDC80O14777 642 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 PFDN6O15212 129 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 URI1O94763 535 aaPredicted RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 TNFSF15O95150 251 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 TTC4O95801 387 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 C9P02748 559 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 ITGA2BP08514 1039 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 JMJD7P0C870 316 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 RBMS1P29558 406 aaKnown RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 MLLT3P42568 568 aaPredicted RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 GFERP55789 205 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 ERVPABLB-1P60509 514 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 KRT33BQ14525 404 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 HIF1AQ16665 826 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 CTSL3PQ5NE16 218 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 SNAP47Q5SQN1 464 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 CENPUQ71F23 418 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 SNIP1Q8TAD8 396 aaKnown RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 ZNF592Q92610 1267 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 ZNF578Q96N58 590 aaPredicted RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 SLC46A1Q96NT5 459 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 BIRC8Q96P09 236 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 PANX3Q96QZ0 392 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 FERD3LQ96RJ6 166 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 ERP44Q9BS26 406 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 NAT9Q9BTE0 207 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 THSD1Q9NS62 852 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 C20orf96Q9NUD7 363 aaPredicted RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 INTS10Q9NVR2 710 aaKnown RBP14.2□□□□□ -0.14
VRK3-206ENST00000594090 PISDQ9UG56 409 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 SLC24A2Q9UI40 661 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 SNX24Q9Y343 169 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 FAM169AQ9Y6X4 670 aa14.2□□□□□ -0.14
VRK3-206ENST00000594090 BHMG1C9JSJ3 638 aaPredicted RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 TLX3O43711 291 aaPredicted RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 ITIH1P19827 911 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 AOAHP28039 575 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 ACADLP28330 430 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 CSE1LP55060 971 aaKnown RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 ADARP55265 1226 aaKnown RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 ARL4CP56559 192 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 WHAMMP3Q1A5X7 153 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 ZNF789Q5FWF6 425 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 ARHGAP22Q7Z5H3 698 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 KCNMB4Q86W47 210 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 IGDCC3Q8IVU1 814 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 DENND6AQ8IWF6 608 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 BBOF1Q8ND07 529 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 AGBL5Q8NDL9 886 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 ACVR1CQ8NER5 493 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 CALML6Q8TD86 181 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 TFGQ92734 400 aaPredicted RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 LRRC39Q96DD0 335 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 C9orf72Q96LT7 481 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 TGM7Q96PF1 710 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 WDR83Q9BRX9 315 aaKnown RBP14.19□□□□□ -0.14
VRK3-206ENST00000594090 RAB33BQ9H082 229 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 DPH5Q9H2P9 285 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 MVB12BQ9H7P6 319 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 EPHA6Q9UF33 1036 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 KLHL3Q9UH77 587 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 CDYLQ9Y232 598 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 VPS9D1Q9Y2B5 631 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 CRYL1Q9Y2S2 319 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 RAXQ9Y2V3 346 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 CHD8Q9HCK8 2581 aa14.19□□□□□ -0.14
VRK3-206ENST00000594090 ACACBO00763 2458 aa14.18□□□□□ -0.14
VRK3-206ENST00000594090 SRRM3A6NNA2 597 aaPredicted RBP14.18□□□□□ -0.14
VRK3-206ENST00000594090 A8MU76 341 aa14.18□□□□□ -0.14
VRK3-206ENST00000594090 KIF2AO00139 706 aaPredicted RBP14.18□□□□□ -0.14
VRK3-206ENST00000594090 CAPN5O15484 640 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms