RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LINC01565O15544 149 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ERAL1O75616 437 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 BPGMP07738 259 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 JUNDP17535 347 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ATP6V1C1P21283 382 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 HNRNPA2B1P22626 353 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 RPL10P27635 214 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 HNRNPKP61978 463 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIG3-216ENST00000593099 KLC1Q07866 573 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 PTPRCAPQ14761 206 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 KRT80Q6KB66 452 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 R3HCC1LQ7Z5L2 792 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 SMPDL3AQ92484 453 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 SIGLEC10Q96LC7 697 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 MRPS30Q9NP92 439 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 PRDM4Q9UKN5 801 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TRAF6Q9Y4K3 522 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 H0Y3Z8 333 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 OR1F1O43749 312 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 HS6ST1O60243 411 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 HMGCLP35914 325 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 HK2P52789 917 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 FRG1Q14331 258 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 PRRT3Q5FWE3 981 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TRIM40Q6P9F5 258 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 NAPRTQ6XQN6 538 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZNF621Q6ZSS3 439 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TMEM132CQ8N3T6 1108 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ARFGAP1Q8N6T3 406 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TMIEQ8NEW7 156 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 USP7Q93009 1102 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 OLFM3Q96PB7 478 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TMEM109Q9BVC6 243 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 CHRM1P11229 460 aaPredicted RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 RABIFP47224 123 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TRPC1P48995 793 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 PDK4Q16654 411 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 MTDHQ86UE4 582 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 CUZD1Q86UP6 607 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 METTL21AQ8WXB1 218 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 VMP1Q96GC9 406 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 COPG2Q9UBF2 871 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 APOBEC3BQ9UH17 382 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 PRKAB1Q9Y478 270 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TEX264Q9Y6I9 313 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 KLHL33A6NCF5 533 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 MAP2K7O14733 419 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 THEGLP0DJG4 465 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZNF8P17098 575 aaPredicted RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 CCND1P24385 295 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 EIF2DP41214 584 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 SPINT3P49223 89 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 PKNOX1P55347 436 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 OLR1P78380 273 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZNF460Q14592 562 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZNF77Q15935 545 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TUBA3EQ6PEY2 450 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 BHLHB9Q6PI77 547 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 DNAJC14Q6Y2X3 702 aaPredicted RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 MAPK15Q8TD08 544 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 BTN2A2Q8WVV5 523 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 SLC25A23Q9BV35 468 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 CPEB1Q9BZB8 566 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 NOL11Q9H8H0 719 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 TBC1D17Q9HA65 648 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZDHHC18Q9NUE0 388 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 KCNK4Q9NYG8 393 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 PLK4O00444 970 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 CYP7B1O75881 506 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 PDE5AO76074 875 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 DPP6P42658 865 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 STXBP1P61764 594 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 OCA2Q04671 838 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 GNA13Q14344 377 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 PHF19Q5T6S3 580 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZYG11AQ6WRX3 759 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ARHGAP12Q8IWW6 846 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 TOE1Q96GM8 510 aaKnown RBP9.67□□□□□ -0.86
LIG3-216ENST00000593099 PCDHGA11Q9Y5H2 935 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 ZNF780BQ9Y6R6 833 aa9.67□□□□□ -0.86
LIG3-216ENST00000593099 LTBP1Q14766 1721 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 UBXN8O00124 270 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 LCP2Q13094 533 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 ADAM15Q13444 863 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 GTF2H2Q13888 395 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 LPAL2Q16609 132 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 LYSMD4Q5XG99 296 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 GTF2H2CQ6P1K8 395 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CILP2Q8IUL8 1156 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 DCUN1D3Q8IWE4 304 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 UBALD2Q8IYN6 164 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CENPLQ8N0S6 344 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 ZNF556Q9HAH1 456 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 MTMR10Q9NXD2 777 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CCDC167Q9P0B6 97 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 SLC17A7Q9P2U7 560 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 RPS6KB2Q9UBS0 482 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 TAGLN3Q9UI15 199 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 MTF2Q9Y483 593 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 CFAP20Q9Y6A4 193 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms